AT4G18610 (LSH9)

Aliases : LSH9

Description : Protein of unknown function (DUF640)

Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18610

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00052610	LSH6,...	Protein G1-like2 OS=Oryza sativa subsp. japonica	0.05	OrthoFinder output from all 47 species
AMTR_s00153p00047660	evm_27.TU.AmTr_v1...	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6...	0.04	OrthoFinder output from all 47 species
AMTR_s00155p00022580	LSH6,...	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.05	OrthoFinder output from all 47 species
Adi_g024284	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g17249	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene12712.t1	LSH4, Aspi01Gene12712	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene25077.t1	LSH4, Aspi01Gene25077	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene29667.t1	LSH4, Aspi01Gene29667	plant-specific ALOG-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene66763.t1	LSH4, Aspi01Gene66763	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0093.g043261	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0639.g080525	LSH4	plant-specific ALOG-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g76156	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.14G090800.1	LSH6, Ceric.14G090800	plant-specific ALOG-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dac_g03257	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g15328	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g44523	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g16892	LSH4	plant-specific ALOG-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dde_g22007	LSH4	plant-specific ALOG-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01020708001	LSH10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.04	OrthoFinder output from all 47 species
GSVIVT01021215001	LSH10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.06	OrthoFinder output from all 47 species
GSVIVT01023521001	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4...	0.06	OrthoFinder output from all 47 species
Gb_15426	LSH4	Protein G1-like5 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os02g41460.1	LSH4, LOC_Os02g41460	Protein G1-like3 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
LOC_Os02g56610.1	LSH4, LOC_Os02g56610	Protein G1-like6 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
LOC_Os06g46030.1	LSH4, LOC_Os06g46030	Protein G1-like2 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
Msp_g25188	LSH6	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g02008	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g10661	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pnu_g12268	LSH6	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc10g007310.1.1	LSH10, Solyc10g007310	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.04	OrthoFinder output from all 47 species
Spa_g07735	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g18334	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Spa_g22798	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g28138	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g47479	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e004570_P001	LSH4, Zm00001e004570	Protein G1-like4 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
Zm00001e012687_P001	LSH4, Zm00001e012687	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.02	OrthoFinder output from all 47 species
Zm00001e019403_P001	LSH6, Zm00001e019403	Protein G1-like7 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
Zm00001e027222_P001	LSH6, Zm00001e027222	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5...	0.06	OrthoFinder output from all 47 species
Zm00001e030343_P002	LSH4, Zm00001e030343	Protein G1-like2 OS=Oryza sativa subsp. indica...	0.02	OrthoFinder output from all 47 species
Zm00001e032784_P001	LSH6, Zm00001e032784	Protein G1 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Zm00001e037775_P001	LSH4, Zm00001e037775	Protein G1-like2 OS=Oryza sativa subsp. indica...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009690	cytokinin metabolic process	None	Extended
BP	GO:0009691	cytokinin biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0052642	lysophosphatidic acid phosphatase activity	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006936	ALOG_dom	31	151

External Links

No external refs found!

AT4G18610 (LSH9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation