AT4G17880

Description : Basic helix-loop-helix (bHLH) DNA-binding family protein

Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17880

Target	Alias	Description	ECC score	Gene Family Method
Adi_g018534	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g106048	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g18919	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20262	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05717	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14626	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15590	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g21686	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g35731	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g19244	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g33982	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g00750	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05383	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g29942	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene05305.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene06699.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09116.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene25400.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53938.t1	Aspi01Gene53938	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53959.t1	Aspi01Gene53959	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g02690	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g59208	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01841	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g32437	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g00807	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g11225	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g16649	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03766	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09116	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01000771001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01027412001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
Gb_36294	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os01g50940.1	AIB, ATAIB,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os04g47040.1	EGL1, EGL3,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os04g47080.1	EGL1, EGL3,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os07g11020.1	BHLH42, TT8,...	Basic helix-loop-helix protein A OS=Pisum sativum...	0.03	OrthoFinder output from all 47 species
LOC_Os10g42430.1	ATMYC2, MYC2,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Lfl_g04153	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g25473	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14087	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g01166	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g03760	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g45430	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g42228	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g02577	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g02335	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010825	No alias	bHLH-type transcription factor & original description: CDS=1-2244	0.03	OrthoFinder output from all 47 species
Sam_g13834	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g096050.4.1	Solyc01g096050	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc05g050560.1.1	Solyc05g050560	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc08g076930.1.1	ATMYC2, MYC2,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc08g083170.1.1	Solyc08g083170	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc10g009290.1.1	Solyc10g009290	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g21627	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g38314	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g44340	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IMP	Interproscan
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IMP	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043425	bHLH transcription factor binding	IPI	Interproscan
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0008643	carbohydrate transport	IEP	HCCA
BP	GO:0008645	hexose transmembrane transport	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0015749	monosaccharide transmembrane transport	IEP	HCCA
BP	GO:0015755	fructose transmembrane transport	IEP	HCCA
BP	GO:0034219	carbohydrate transmembrane transport	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034486	vacuolar transmembrane transport	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1902334	fructose export from vacuole to cytoplasm	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	416	462
IPR025610	MYC/MYB_N	63	250

External Links

No external refs found!

AT4G17880

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation