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  5. AT4G17840

AT4G17840


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG0003296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17840

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00098530 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g106747 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.02 OrthoFinder output from all 47 species
Adi_g114569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49669 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.03 OrthoFinder output from all 47 species
Aop_g07683 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene32768.t1 Aspi01Gene32768 regulatory protein *(BCM) of chlorophyll homeostasis &... 0.04 OrthoFinder output from all 47 species
Ceric.05G091300.1 Ceric.05G091300 regulatory protein *(BCM) of chlorophyll homeostasis &... 0.03 OrthoFinder output from all 47 species
Ceric.28G021600.1 Ceric.28G021600 regulatory protein *(BCM) of chlorophyll homeostasis &... 0.05 OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Dde_g08647 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.02 OrthoFinder output from all 47 species
GSVIVT01013166001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_18613 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os03g01014.1 LOC_Os03g01014 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10435404g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g24757 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.04 OrthoFinder output from all 47 species
Nbi_g03687 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.05 OrthoFinder output from all 47 species
Ore_g07334 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.02 OrthoFinder output from all 47 species
Solyc08g005010.4.1 Solyc08g005010 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Tin_g10299 No alias regulatory protein *(BCM) of chlorophyll homeostasis &... 0.05 OrthoFinder output from all 47 species
Zm00001e041235_P001 Zm00001e041235 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000257 nitrilase activity IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
MF GO:0003951 NAD+ kinase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005345 purine nucleobase transmembrane transporter activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010154 fruit development IEP HCCA
BP GO:0010197 polar nucleus fusion IEP HCCA
BP GO:0010201 response to continuous far red light stimulus by the high-irradiance response system IEP HCCA
MF GO:0015205 nucleobase transmembrane transporter activity IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP HCCA
MF GO:0016815 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles IEP HCCA
MF GO:0018822 nitrile hydratase activity IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031279 regulation of cyclase activity IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
MF GO:0032441 pheophorbide a oxygenase activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045962 positive regulation of development, heterochronic IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048506 regulation of timing of meristematic phase transition IEP HCCA
BP GO:0048509 regulation of meristem development IEP HCCA
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP HCCA
BP GO:0048513 animal organ development IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
MF GO:0080061 indole-3-acetonitrile nitrilase activity IEP HCCA
MF GO:0080109 indole-3-acetonitrile nitrile hydratase activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1902171 regulation of tocopherol cyclase activity IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR003675 Rce1-like 237 389
No external refs found!