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  5. AT4G17520

AT4G17520


Description : Hyaluronan / mRNA binding family


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17520

Target Alias Description ECC score Gene Family Method Actions
Adi_g117738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117739 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Aev_g18185 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001594 No alias not classified & original description: CDS=186-1532 0.06 OrthoFinder output from all 47 species
Ceric.19G044900.1 Ceric.19G044900 regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g41880.1 LOC_Os01g41880 RGG repeats nuclear RNA binding protein A (Fragment)... 0.1 OrthoFinder output from all 47 species
Len_g12236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004818 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Solyc01g090190.3.1 Solyc01g090190 RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g51990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05938 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Zm00001e019955_P001 Zm00001e019955 RGG repeats nuclear RNA binding protein A (Fragment)... 0.05 OrthoFinder output from all 47 species
Zm00001e019958_P002 Zm00001e019958 RGG repeats nuclear RNA binding protein A (Fragment)... 0.06 OrthoFinder output from all 47 species
Zm00001e026661_P002 Zm00001e026661 RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005777 peroxisome IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0009735 response to cytokinin IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003938 IMP dehydrogenase activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 136 242
IPR019084 Stm1-like_N 1 63
No external refs found!