AT4G17390


Description : Ribosomal protein L23/L15e family protein


Gene families : OG0002002 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17390

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00023340 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Adi_g011907 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Adi_g108239 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124562 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g46320 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g19522 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Ala_g35980 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g45893 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g00218 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.32 OrthoFinder output from all 47 species
Azfi_s0148.g053106 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Cba_g11182 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g11183 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.30G015200.1 Ceric.30G015200 component *(eL15) of large ribosomal-subunit (LSU)... 0.29 OrthoFinder output from all 47 species
Ceric.31G036200.1 Ceric.31G036200 component *(eL15) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000310.75 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Cre02.g091100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Dac_g12320 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.25 OrthoFinder output from all 47 species
Dcu_g06645 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g36045 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Ehy_g08177 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01007404001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder output from all 47 species
GSVIVT01014039001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder output from all 47 species
GSVIVT01018183001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Gb_32917 No alias component RPL15 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Gb_36986 No alias component RPL15 of LSU proteome component 0.2 OrthoFinder output from all 47 species
LOC_Os03g40180.1 LOC_Os03g40180 component RPL15 of LSU proteome component 0.34 OrthoFinder output from all 47 species
LOC_Os05g19370.1 LOC_Os05g19370 component RPL15 of LSU proteome component 0.39 OrthoFinder output from all 47 species
Len_g06859 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Lfl_g00902 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Lfl_g29958 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
MA_19619g0010 No alias component RPL15 of LSU proteome component 0.08 OrthoFinder output from all 47 species
MA_29804g0010 No alias component RPL15 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Mp1g06500.1 No alias component RPL15 of LSU proteome component 0.37 OrthoFinder output from all 47 species
Msp_g17670 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g01701 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Ore_g41630 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g29041 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g30101 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Pir_g54068 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pp3c17_22180V3.1 Pp3c17_22180 Ribosomal protein L23/L15e family protein 0.16 OrthoFinder output from all 47 species
Ppi_g08995 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g26533 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g43751 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g57425 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016249 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g13183 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g13184 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g14846 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g24927 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g36073 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g36074 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g42941 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Smo270259 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Solyc04g008460.4.1 Solyc04g008460 component RPL15 of LSU proteome component 0.37 OrthoFinder output from all 47 species
Solyc06g060400.3.1 Solyc06g060400 component RPL15 of LSU proteome component 0.44 OrthoFinder output from all 47 species
Solyc06g064630.3.1 Solyc06g064630 component RPL15 of LSU proteome component 0.47 OrthoFinder output from all 47 species
Spa_g26060 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g26061 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.25 OrthoFinder output from all 47 species
Spa_g39098 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Spa_g55931 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Tin_g30457 No alias component *(eL15) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Zm00001e010380_P001 Zm00001e010380 component RPL15 of LSU proteome component 0.37 OrthoFinder output from all 47 species
Zm00001e032897_P001 Zm00001e032897 component RPL15 of LSU proteome component 0.34 OrthoFinder output from all 47 species
Zm00001e034995_P001 Zm00001e034995 component RPL15 of LSU proteome component 0.38 OrthoFinder output from all 47 species
Zm00001e034996_P001 Zm00001e034996 component RPL15 of LSU proteome component 0.37 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR000439 Ribosomal_L15e 2 190
No external refs found!