AT4G17390

Description : Ribosomal protein L23/L15e family protein

Gene families : OG0002002 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17390

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00111p00023340	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Adi_g011907	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Adi_g108239	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124562	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g46320	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g19522	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Ala_g35980	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g45893	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g00218	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.32	OrthoFinder output from all 47 species
Azfi_s0148.g053106	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Cba_g11182	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g11183	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.30G015200.1	Ceric.30G015200	component *(eL15) of large ribosomal-subunit (LSU)...	0.29	OrthoFinder output from all 47 species
Ceric.31G036200.1	Ceric.31G036200	component *(eL15) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000310.75	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Cre02.g091100	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Dac_g12320	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Dcu_g06645	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g36045	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Ehy_g08177	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01007404001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.37	OrthoFinder output from all 47 species
GSVIVT01014039001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	OrthoFinder output from all 47 species
GSVIVT01018183001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Gb_32917	No alias	component RPL15 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Gb_36986	No alias	component RPL15 of LSU proteome component	0.2	OrthoFinder output from all 47 species
LOC_Os03g40180.1	LOC_Os03g40180	component RPL15 of LSU proteome component	0.34	OrthoFinder output from all 47 species
LOC_Os05g19370.1	LOC_Os05g19370	component RPL15 of LSU proteome component	0.39	OrthoFinder output from all 47 species
Len_g06859	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g00902	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Lfl_g29958	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
MA_19619g0010	No alias	component RPL15 of LSU proteome component	0.08	OrthoFinder output from all 47 species
MA_29804g0010	No alias	component RPL15 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Mp1g06500.1	No alias	component RPL15 of LSU proteome component	0.37	OrthoFinder output from all 47 species
Msp_g17670	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Nbi_g01701	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Ore_g41630	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pir_g29041	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g30101	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Pir_g54068	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c17_22180V3.1	Pp3c17_22180	Ribosomal protein L23/L15e family protein	0.16	OrthoFinder output from all 47 species
Ppi_g08995	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g26533	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g43751	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g57425	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016249	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g13183	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g13184	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g14846	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g24927	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g36073	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g36074	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g42941	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo270259	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Solyc04g008460.4.1	Solyc04g008460	component RPL15 of LSU proteome component	0.37	OrthoFinder output from all 47 species
Solyc06g060400.3.1	Solyc06g060400	component RPL15 of LSU proteome component	0.44	OrthoFinder output from all 47 species
Solyc06g064630.3.1	Solyc06g064630	component RPL15 of LSU proteome component	0.47	OrthoFinder output from all 47 species
Spa_g26060	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g26061	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Spa_g39098	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Spa_g55931	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Tin_g30457	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Zm00001e010380_P001	Zm00001e010380	component RPL15 of LSU proteome component	0.37	OrthoFinder output from all 47 species
Zm00001e032897_P001	Zm00001e032897	component RPL15 of LSU proteome component	0.34	OrthoFinder output from all 47 species
Zm00001e034995_P001	Zm00001e034995	component RPL15 of LSU proteome component	0.38	OrthoFinder output from all 47 species
Zm00001e034996_P001	Zm00001e034996	component RPL15 of LSU proteome component	0.37	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000439	Ribosomal_L15e	2	190

External Links

No external refs found!

AT4G17390

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation