AT4G17040 (CLPR4)

Aliases : CLPR4

Description : CLP protease R subunit 4

Gene families : OG0000988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000988_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17040

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00164p00068000	CLPR1, SVR2,...	Protein degradation.peptidase families.serine-type...	0.05	OrthoFinder output from all 47 species
Aev_g07767	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Aob_g02995	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Aob_g22566	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Azfi_s0015.g013857	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Azfi_s0037.g025925	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Cba_g25400	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Cre03.g204350	CLPR4	Protein degradation.peptidase families.serine-type...	0.02	OrthoFinder output from all 47 species
Cre07.g331500	No alias	Protein degradation.peptidase families.serine-type...	0.02	OrthoFinder output from all 47 species
Cre14.g619100	CLPR1, SVR2, NCLPP5	Protein degradation.peptidase families.serine-type...	0.04	OrthoFinder output from all 47 species
Dac_g10911	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Dcu_g11508	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Dcu_g17058	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Dde_g02711	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Dde_g21817	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Ehy_g18668	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Gb_12676	No alias	non-proteolytic core component ClpR of chloroplast...	0.03	OrthoFinder output from all 47 species
LOC_Os03g22430.1	LOC_Os03g22430	non-proteolytic core component ClpR of chloroplast...	0.06	OrthoFinder output from all 47 species
Len_g15208	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Lfl_g01084	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
MA_10429819g0020	CLPR1, SVR2, NCLPP5	non-proteolytic core component ClpR of chloroplast...	0.02	OrthoFinder output from all 47 species
MA_6114g0010	No alias	ATP-dependent Clp protease proteolytic subunit-related...	0.05	OrthoFinder output from all 47 species
MA_80115g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_8278512g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp7g03170.1	CLPR4	non-proteolytic core component ClpR of chloroplast...	0.03	OrthoFinder output from all 47 species
Msp_g05047	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Nbi_g05257	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Nbi_g11210	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Pnu_g07357	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Pnu_g13722	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003581	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Sam_g11367	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Sam_g17176	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Sam_g17177	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Solyc01g099690.3.1	Solyc01g099690	non-proteolytic core component ClpR of chloroplast...	0.05	OrthoFinder output from all 47 species
Solyc08g077890.3.1	CLPR4, Solyc08g077890	non-proteolytic core component ClpR of chloroplast...	0.06	OrthoFinder output from all 47 species
Solyc10g049710.2.1	CLPR1, SVR2,...	non-proteolytic core component ClpR of chloroplast...	0.05	OrthoFinder output from all 47 species
Spa_g12805	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Zm00001e017288_P001	CLPR4, Zm00001e017288	non-proteolytic core component ClpR of chloroplast...	0.03	OrthoFinder output from all 47 species
Zm00001e032571_P001	CLPR1, SVR2,...	non-proteolytic core component ClpR of chloroplast...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	IMP	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	IDA	Interproscan
CC	GO:0009536	plastid	IDA	Interproscan
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	IMP	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	RCA	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004462	lactoylglutathione lyase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
BP	GO:0006089	lactate metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009368	endopeptidase Clp complex	IEP	HCCA
BP	GO:0009438	methylglyoxal metabolic process	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
CC	GO:0009706	chloroplast inner membrane	IEP	HCCA
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010190	cytochrome b6f complex assembly	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0017014	protein nitrosylation	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	HCCA
BP	GO:0018198	peptidyl-cysteine modification	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
BP	GO:0042182	ketone catabolic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045038	protein import into chloroplast thylakoid membrane	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046185	aldehyde catabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051596	methylglyoxal catabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090342	obsolete regulation of cell aging	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023562	ClpP/TepA	105	286

External Links

No external refs found!

AT4G17040 (CLPR4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation