AT4G13890 (SHM5, EDA37, EDA36)

Aliases : SHM5, EDA37, EDA36

Description : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G13890
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
Ala_g06665	SHM7	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Azfi_s0018.g014711	STM, SHM1, SHMT1	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Azfi_s0102.g044437	STM, SHM1, SHMT1	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Dcu_g11320	SHM7	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Nbi_g04285	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Ore_g03183	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Sam_g07760	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004372	glycine hydroxymethyltransferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	ISS	Interproscan
BP	GO:0006563	L-serine metabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010197	polar nucleus fusion	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0004311	farnesyltranstransferase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004659	prenyltransferase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
MF	GO:0008422	beta-glucosidase activity	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0015926	glucosidase activity	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0019137	thioglucosidase activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0048829	root cap development	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR039429	SHMT-like_dom	14	411

External Links

No external refs found!

AT4G13890 (SHM5, EDA37, EDA36)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation