AT4G13250 (NYC1)

Aliases : NYC1

Description : NAD(P)-binding Rossmann-fold superfamily protein

Gene families : OG0002161 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002161_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G13250
Cluster	HCCA: Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
Als_g12205	NYC1	component *(NYC1) of chlorophyll b reductase complex &...	0.04	OrthoFinder output from all 47 species
Aop_g05539	NYC1	component *(NYC1) of chlorophyll b reductase complex &...	0.03	OrthoFinder output from all 47 species
Cre14.g608800	NOL	Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll...	0.02	OrthoFinder output from all 47 species
GSVIVT01015384001	NYC1	Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll...	0.02	OrthoFinder output from all 47 species
Gb_29139	NYC1	component NYC1 of chlorophyll b reductase complex	0.07	OrthoFinder output from all 47 species
LOC_Os01g12710.1	NYC1, LOC_Os01g12710	component NYC1 of chlorophyll b reductase complex	0.06	OrthoFinder output from all 47 species
LOC_Os03g45194.1	NOL, LOC_Os03g45194	component NOL of chlorophyll b reductase complex	0.09	OrthoFinder output from all 47 species
Lfl_g10011	NYC1	component *(NYC1) of chlorophyll b reductase complex &...	0.03	OrthoFinder output from all 47 species
Mp4g07280.1	NYC1	component NYC1 of chlorophyll b reductase complex	0.02	OrthoFinder output from all 47 species
Ore_g11018	NYC1	component *(NYC1) of chlorophyll b reductase complex &...	0.02	OrthoFinder output from all 47 species
Ore_g19911	NOL	component *(NOL) of chlorophyll b reductase complex &...	0.03	OrthoFinder output from all 47 species
Pir_g57524	NOL	component *(NOL) of chlorophyll b reductase complex &...	0.03	OrthoFinder output from all 47 species
Sam_g38593	No alias	component *(NYC1) of chlorophyll b reductase complex &...	0.04	OrthoFinder output from all 47 species
Solyc07g024000.3.1	NYC1, Solyc07g024000	component NYC1 of chlorophyll b reductase complex	0.01	OrthoFinder output from all 47 species
Zm00001e016407_P001	NYC1, Zm00001e016407	component NYC1 of chlorophyll b reductase complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006787	porphyrin-containing compound catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009507	chloroplast	IC	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IMP	Interproscan
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015996	chlorophyll catabolic process	IMP	Interproscan
MF	GO:0016491	oxidoreductase activity	ISS	Interproscan
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033015	tetrapyrrole catabolic process	None	Extended
MF	GO:0034256	chlorophyll(ide) b reductase activity	IMP	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046149	pigment catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000064	L-ornithine transmembrane transporter activity	IEP	HCCA
BP	GO:0000303	response to superoxide	IEP	HCCA
BP	GO:0000305	response to oxygen radical	IEP	HCCA
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0001046	core promoter sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
BP	GO:0001101	response to acid chemical	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004031	aldehyde oxidase activity	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
MF	GO:0005290	L-histidine transmembrane transporter activity	IEP	HCCA
MF	GO:0005476	carnitine:acyl carnitine antiporter activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006560	proline metabolic process	IEP	HCCA
BP	GO:0006561	proline biosynthetic process	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010260	obsolete animal organ senescence	IEP	HCCA
MF	GO:0010293	abscisic aldehyde oxidase activity	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015173	aromatic amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	HCCA
MF	GO:0015226	carnitine transmembrane transporter activity	IEP	HCCA
MF	GO:0015227	acyl carnitine transmembrane transporter activity	IEP	HCCA
MF	GO:0015651	quaternary ammonium group transmembrane transporter activity	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
MF	GO:0016623	oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0018488	aryl-aldehyde oxidase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0050302	indole-3-acetaldehyde oxidase activity	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0080124	pheophytinase activity	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901474	azole transmembrane transporter activity	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002347	SDR_fam	163	367

External Links

No external refs found!

AT4G13250 (NYC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation