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  5. AT4G11860

AT4G11860


Description : Protein of unknown function (DUF544)


Gene families : OG0003238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003238_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G11860
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene26225.t2 Aspi01Gene26225 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_04222 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e013255_P001 Zm00001e013255 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003691 double-stranded telomeric DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0015824 proline transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR033979 MINDY_domain 67 191
No external refs found!