AT4G11250 (AGL52)

Aliases : AGL52

Description : AGAMOUS-like 52

Gene families : OG0011622 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011622_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G11250
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AT5G27580	AGL89	AGAMOUS-like 89	0.04	OrthoFinder output from all 47 species
AT5G37415	AGL105	AGAMOUS-like 105	0.05	OrthoFinder output from all 47 species
AT5G38740	AGL77	AGAMOUS-like 77	0.03	OrthoFinder output from all 47 species
AT5G40220	AGL43	AGAMOUS-like 43	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000374	Group III intron splicing	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	13	51

External Links

No external refs found!

AT4G11250 (AGL52)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation