AT4G10240

Description : B-box zinc finger family protein

Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G10240
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00204180	STO,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00182p00043350	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
Aob_g06573	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g11974	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene09321.t1	Aspi01Gene09321	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.17G005800.1	STO, Ceric.17G005800	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g25857	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08980	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g43170.1	LOC_Os02g43170	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Lfl_g31186	STO	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32457	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010219	STO	BBX class-IV transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018285	STO	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Smo444777	STO	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Tin_g09563	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007388_P002	STH2, Zm00001e007388	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
Zm00001e007720_P001	STO, Zm00001e007720	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
Zm00001e022915_P001	STO, Zm00001e022915	transcription factor (BBX-DBB)	0.05	OrthoFinder output from all 47 species
Zm00001e041335_P001	Zm00001e041335	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
BP	GO:0006825	copper ion transport	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009641	shade avoidance	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010345	suberin biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016630	protochlorophyllide reductase activity	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
MF	GO:0050062	long-chain-fatty-acyl-CoA reductase activity	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	60	97

External Links

No external refs found!

AT4G10240

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation