AT4G08980 (FBW2)

Aliases : FBW2

Description : F-BOX WITH WD-40 2

Gene families : OG0000527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G08980

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00230040	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
AT4G05470	No alias	RNI-like superfamily protein	0.06	OrthoFinder output from all 47 species
Adi_g094464	FBW2	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ala_g33729	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g26827	SKIP1	substrate adaptor of SCF E3 ubiquitin ligase complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene55291.t1	FBW2, Aspi01Gene55291	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01790	SKIP1	substrate adaptor of SCF E3 ubiquitin ligase complex &...	0.03	OrthoFinder output from all 47 species
Dac_g16702	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009069001	FBW2	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Len_g18138	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_206006g0010	FBW2	component FBX of SCF E3 ubiquitin ligase complex	0.04	OrthoFinder output from all 47 species
Mp3g07000.1	No alias	component F-box of SCF E3 ubiquitin ligase complex	0.02	OrthoFinder output from all 47 species
Mp4g03420.1	No alias	component FBX of SCF E3 ubiquitin ligase complex	0.02	OrthoFinder output from all 47 species
Nbi_g12157	FBW2	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Pnu_g16820	FBW2	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Sam_g11159	No alias	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Sam_g52547	No alias	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Solyc11g009050.3.1	FBW2, Solyc11g009050	component FBX of SCF E3 ubiquitin ligase complex	0.06	OrthoFinder output from all 47 species
Zm00001e015898_P003	FBW2, Zm00001e015898	component FBX of SCF E3 ubiquitin ligase complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IMP	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	IMP	Interproscan
BP	GO:0010629	negative regulation of gene expression	IMP	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	17	56
IPR001611	Leu-rich_rpt	130	152
IPR001611	Leu-rich_rpt	189	209

External Links

No external refs found!

AT4G08980 (FBW2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation