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AT4G03430 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : pre-mRNA splicing factor-related


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G03430

Target Alias Description ECC score Gene Family Method Actions
Ceric.1Z128700.1 STA1, EMB2770,... component *(PRPF6) of U5 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.19 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre14.g633650 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g14994 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Len_g00746 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Mp6g10790.1 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Nbi_g11692 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ore_g19399 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Pir_g09796 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002228 STA1, EMB2770 regulatory protein of poly(A) RNA polymerase activity &... 0.03 OrthoFinder output from all 47 species
Sam_g26501 No alias component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g02882 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009409 response to cold IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
InterPro domains Description Start Stop
IPR010491 PRP1_N 102 266
No external refs found!