AT4G02060 (MCM7, PRL)


Aliases : MCM7, PRL

Description : Minichromosome maintenance (MCM2/3/5) family protein


Gene families : OG0001056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02060

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00128450 MCM4,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder output from all 47 species
AMTR_s00057p00030490 MCM7, PRL,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Adi_g059401 MCM9 component *(MCM9) of MCM8-9 cell cycle auxiliary complex... 0.02 OrthoFinder output from all 47 species
Ala_g24409 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Ala_g28206 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Als_g06966 MCM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07824 MCM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07825 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Aop_g09863 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Aop_g23244 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Aspi01Gene22827.t1 MCM4, Aspi01Gene22827 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Aspi01Gene25633.t1 MCM4, Aspi01Gene25633 component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Aspi01Gene25932.t1 MCM7, PRL,... component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Azfi_s0206.g057809 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Azfi_s0544.g076399 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Ceric.04G002100.1 MCM7, PRL,... component *(MCM7) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Ceric.10G009500.1 MCM4, Ceric.10G009500 component *(MCM4) of MCM replicative DNA helicase... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.164 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.38 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.03 OrthoFinder output from all 47 species
Cre07.g316850 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.09 OrthoFinder output from all 47 species
Cre10.g455850 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.05 OrthoFinder output from all 47 species
Dac_g06469 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Dac_g14939 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Dac_g15991 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Dcu_g05722 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Dcu_g40402 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
GSVIVT01024207001 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.13 OrthoFinder output from all 47 species
GSVIVT01028118001 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.14 OrthoFinder output from all 47 species
Gb_09191 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
Gb_35205 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.11 OrthoFinder output from all 47 species
Gb_36024 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.12 OrthoFinder output from all 47 species
LOC_Os01g36390.1 MCM4, LOC_Os01g36390 component MCM4 of MCM replicative DNA helicase complex 0.11 OrthoFinder output from all 47 species
LOC_Os12g37400.1 MCM7, PRL, LOC_Os12g37400 component MCM7 of MCM replicative DNA helicase complex 0.07 OrthoFinder output from all 47 species
Len_g00736 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Len_g11914 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.02 OrthoFinder output from all 47 species
Lfl_g19272 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Lfl_g39364 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
MA_10426237g0010 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.13 OrthoFinder output from all 47 species
MA_10434231g0010 MCM4 DNA replication licensing factor MCM4 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
Mp2g02600.1 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
Mp3g02380.1 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
Mp4g02430.1 MCM9 component MCM9 of MCM8-9 cell cycle auxiliary complex 0.08 OrthoFinder output from all 47 species
Msp_g06139 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Msp_g09222 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Msp_g20406 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Nbi_g03098 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Nbi_g04377 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Ore_g27144 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.02 OrthoFinder output from all 47 species
Ppi_g01337 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Ppi_g25980 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004187 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0298.g027193 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Sam_g06717 No alias component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Sam_g09734 No alias component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Sam_g27151 No alias component *(MCM7) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Solyc01g079500.4.1 MCM7, PRL, Solyc01g079500 component MCM7 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
Solyc01g105520.3.1 MCM9, Solyc01g105520 component MCM9 of MCM8-9 cell cycle auxiliary complex 0.03 OrthoFinder output from all 47 species
Solyc01g110130.3.1 MCM4, Solyc01g110130 component MCM4 of MCM replicative DNA helicase complex 0.05 OrthoFinder output from all 47 species
Spa_g10751 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Spa_g11927 MCM7, PRL not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g11928 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Tin_g06082 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Tin_g12164 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Zm00001e002873_P001 MCM7, PRL, Zm00001e002873 component MCM7 of MCM replicative DNA helicase complex 0.08 OrthoFinder output from all 47 species
Zm00001e018214_P001 MCM7, PRL, Zm00001e018214 component MCM7 of MCM replicative DNA helicase complex 0.11 OrthoFinder output from all 47 species
Zm00001e026379_P001 MCM4, Zm00001e026379 component MCM4 of MCM replicative DNA helicase complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006268 DNA unwinding involved in DNA replication TAS Interproscan
BP GO:0006270 DNA replication initiation ISS Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
MF GO:0008094 ATP-dependent activity, acting on DNA ISS Interproscan
BP GO:0008283 cell population proliferation IEP Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway TAS Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000281 mitotic cytokinesis IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0004799 thymidylate synthase activity IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006271 DNA strand elongation involved in DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006349 regulation of gene expression by genomic imprinting IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0009256 10-formyltetrahydrofolate metabolic process IEP HCCA
BP GO:0009257 10-formyltetrahydrofolate biosynthetic process IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010069 zygote asymmetric cytokinesis in embryo sac IEP HCCA
BP GO:0010070 zygote asymmetric cell division IEP HCCA
BP GO:0010216 maintenance of DNA methylation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022616 DNA strand elongation IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031057 negative regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0032196 transposition IEP HCCA
BP GO:0032197 transposition, RNA-mediated IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0035065 regulation of histone acetylation IEP HCCA
BP GO:0035067 negative regulation of histone acetylation IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
MF GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061640 cytoskeleton-dependent cytokinesis IEP HCCA
MF GO:0070182 DNA polymerase binding IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090239 regulation of histone H4 acetylation IEP HCCA
BP GO:0090241 negative regulation of histone H4 acetylation IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:1901983 regulation of protein acetylation IEP HCCA
BP GO:1901984 negative regulation of protein acetylation IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP HCCA
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP HCCA
InterPro domains Description Start Stop
IPR027925 MCM_N 15 133
IPR033762 MCM_OB 143 273
IPR001208 MCM_dom 314 536
No external refs found!