AT4G00990

Description : Transcription factor jumonji (jmjC) domain-containing protein

Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00990

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00206860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.JUMONJI...	0.04	OrthoFinder output from all 47 species
Adi_g025133	No alias	histone demethylase *(KDM3) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086368	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g113340	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene13978.t1	Aspi01Gene13978	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g31854	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.21G078400.1	Ceric.21G078400	histone demethylase *(KDM3) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.23G014800.1	Ceric.23G014800	histone demethylase *(KDM3) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g12281	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g18399	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17375	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01027160001	No alias	RNA biosynthesis.transcriptional activation.JUMONJI...	0.04	OrthoFinder output from all 47 species
LOC_Os02g58210.1	LOC_Os02g58210	histone demethylase (KDM3). transcription factor (JUMONJI)	0.03	OrthoFinder output from all 47 species
LOC_Os03g31594.1	LOC_Os03g31594	histone demethylase (KDM3). transcription factor (JUMONJI)	0.03	OrthoFinder output from all 47 species
LOC_Os09g22540.1	LOC_Os09g22540	histone demethylase (KDM3). transcription factor (JUMONJI)	0.01	OrthoFinder output from all 47 species
Len_g12082	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g40363	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
MA_218662g0010	No alias	histone demethylase (KDM3). transcription factor (JUMONJI)	0.02	OrthoFinder output from all 47 species
Msp_g20297	No alias	histone demethylase *(KDM3) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g08776	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g30156	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g38696	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g45466	No alias	histone demethylase *(KDM3) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05933	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g31029	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0133.g022266	No alias	histone demethylase *(KDM3) & original description: CDS=48-3734	0.02	OrthoFinder output from all 47 species
Sam_g17510	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g40489	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g12985	No alias	histone demethylase *(KDM3) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e010541_P001	Zm00001e010541	histone demethylase (KDM3)	0.03	OrthoFinder output from all 47 species
Zm00001e023535_P001	Zm00001e023535	histone demethylase (KDM3). transcription factor (JUMONJI)	0.04	OrthoFinder output from all 47 species
Zm00001e035224_P001	Zm00001e035224	histone demethylase (KDM3)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	HCCA
BP	GO:0010032	meiotic chromosome condensation	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051316	attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation	IEP	HCCA
BP	GO:0051455	monopolar spindle attachment to meiosis I kinetochore	IEP	HCCA
BP	GO:0051754	meiotic sister chromatid cohesion, centromeric	IEP	HCCA
BP	GO:0070601	centromeric sister chromatid cohesion	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003347	JmjC_dom	685	781

External Links

No external refs found!

AT4G00990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation