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  5. Pnu_g30590

Pnu_g30590 (VIP2, AtVIP2)


Aliases : VIP2, AtVIP2

Description : not classified & original description: none


Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g30590
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT1G07705 No alias NOT2 / NOT3 / NOT5 family 0.03 OrthoFinder output from all 47 species
Adi_g015721 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Adi_g015724 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Adi_g057086 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Adi_g109476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06550 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene51728.t1 VIP2, AtVIP2,... component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Dde_g01636 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
MA_19243g0010 VIP2, AtVIP2 component NOT2 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Pir_g08062 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Pnu_g20979 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021923 No alias component *(NOT2) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!