AT3G62670 (RR20, MEE41, ARR20)

Aliases : RR20, MEE41, ARR20

Description : response regulator 20

Gene families : OG0000124 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000124_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G62670

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00186590	ARR11,...	RNA biosynthesis.transcriptional activation.ARR-B...	0.01	OrthoFinder output from all 47 species
AT4G16110	RR2, ARR2	response regulator 2	0.03	OrthoFinder output from all 47 species
Adi_g011069	ARR1, RR1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054623	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080126	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g46457	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12147	ARR11	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g20636	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g13893	ARR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001336.2	No alias	Two-component response regulator ARR1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre02.g083750	LUX, PCL1	Transcription factor BOA OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g15966	ARR11	subgroup ARR-B transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g39028	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g00840	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04944	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06024	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g06166	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Gb_27151	ARR1, RR1	B-type cytokinin ARR response activator. transcription...	0.02	OrthoFinder output from all 47 species
Len_g27054	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g49270	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Msp_g15649	ARR11	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g34362	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g08264	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Ore_g34775	LUX, PCL1	MYB-RELATED transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43788	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g20416	ARR11	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g66612	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g28850	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Sam_g39384	No alias	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g080960.1.1	Solyc10g080960	Transcription factor MYBC1 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Spa_g10934	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g46548	ARR11	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g51591	ARR10, RR10	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013844_P002	RR12, ARR12,...	B-type cytokinin ARR response activator. transcription...	0.03	OrthoFinder output from all 47 species
Zm00001e018927_P001	ARR11, Zm00001e018927	B-type cytokinin ARR response activator. transcription...	0.02	OrthoFinder output from all 47 species
Zm00001e028539_P002	ARR11, Zm00001e028539	B-type cytokinin ARR response activator. transcription...	0.02	OrthoFinder output from all 47 species
Zm00001e038688_P001	ARR1, RR1, Zm00001e038688	B-type cytokinin ARR response activator. transcription...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	ISS	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009736	cytokinin-activated signaling pathway	TAS	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048446	petal morphogenesis	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	139	194
IPR001789	Sig_transdc_resp-reg_receiver	7	73

External Links

No external refs found!

AT3G62670 (RR20, MEE41, ARR20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation