AT3G62270

Description : HCO3- transporter family

Gene families : OG0000669 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000669_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G62270
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00052p00085150	ATBOR4, BOR4,...	Solute transport.carrier-mediated transport.APC...	0.03	OrthoFinder output from all 47 species
AT1G15460	ATBOR4, BOR4	HCO3- transporter family	0.02	OrthoFinder output from all 47 species
AT1G74810	BOR5	HCO3- transporter family	0.04	OrthoFinder output from all 47 species
AT3G06450	No alias	HCO3- transporter family	0.05	OrthoFinder output from all 47 species
Adi_g050293	No alias	borate transporter *(BOR) & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g055272	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g085925	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g44112	No alias	borate transporter *(BOR) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g23647	No alias	borate transporter *(BOR) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g13939	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene28016.t1	Aspi01Gene28016	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g04720	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g12417	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g22323	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g25865	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g36417	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g43301	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g47091	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01017223001	ATBOR4, BOR4	Solute transport.carrier-mediated transport.APC...	0.05	OrthoFinder output from all 47 species
GSVIVT01035800001	No alias	Solute transport.carrier-mediated transport.APC...	0.03	OrthoFinder output from all 47 species
LOC_Os01g08020.1	ATBOR4, BOR4,...	borate transporter (BOR)	0.01	OrthoFinder output from all 47 species
LOC_Os12g37840.1	LOC_Os12g37840	borate transporter (BOR)	0.01	OrthoFinder output from all 47 species
Lfl_g11223	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g19930	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g34602	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g39771	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
MA_101395g0010	No alias	borate transporter (BOR)	0.03	OrthoFinder output from all 47 species
Mp4g00440.1	No alias	borate transporter (BOR)	0.04	OrthoFinder output from all 47 species
Msp_g16022	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g34242	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g32133	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g02119	No alias	borate transporter *(BOR) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g27830	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014194	No alias	borate transporter *(BOR) & original description: CDS=1-1965	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017717	No alias	borate transporter *(BOR) & original description: CDS=1-1821	0.03	OrthoFinder output from all 47 species
Sam_g30103	No alias	borate transporter *(BOR) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g52864	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo78956	BOR1	Solute transport.carrier-mediated transport.APC...	0.02	OrthoFinder output from all 47 species
Solyc03g120020.4.1	ATBOR4, BOR4,...	borate transporter (BOR)	0.03	OrthoFinder output from all 47 species
Spa_g15025	No alias	borate transporter *(BOR) & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g02779	No alias	borate transporter *(BOR) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
MF	GO:0015103	inorganic anion transmembrane transporter activity	None	Extended
MF	GO:0015301	obsolete anion:anion antiporter activity	ISS	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transmembrane transport	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034406	cell wall beta-glucan metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
MF	GO:0046715	active borate transmembrane transporter activity	IGI	Interproscan
BP	GO:0048364	root development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0052541	plant-type cell wall cellulose metabolic process	RCA	Interproscan
BP	GO:0052546	cell wall pectin metabolic process	RCA	Interproscan
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098661	inorganic anion transmembrane transport	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902025	nitrate import	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0002020	protease binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	HCCA
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006829	zinc ion transport	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0008422	beta-glucosidase activity	IEP	HCCA
MF	GO:0008553	P-type proton-exporting transporter activity	IEP	HCCA
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
CC	GO:0010168	ER body	IEP	HCCA
BP	GO:0010315	auxin export across the plasma membrane	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010540	basipetal auxin transport	IEP	HCCA
BP	GO:0010541	acropetal auxin transport	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015662	P-type ion transporter activity	IEP	HCCA
MF	GO:0015926	glucosidase activity	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
MF	GO:0045431	flavonol synthase activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070417	cellular response to cold	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071366	cellular response to indolebutyric acid stimulus	IEP	HCCA
BP	GO:0071407	cellular response to organic cyclic compound	IEP	HCCA
BP	GO:0071417	cellular response to organonitrogen compound	IEP	HCCA
BP	GO:0080026	response to indolebutyric acid	IEP	HCCA
BP	GO:0080119	ER body organization	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140358	P-type transmembrane transporter activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011531	HCO3_transpt-like_TM_dom	202	371
IPR011531	HCO3_transpt-like_TM_dom	458	548
IPR011531	HCO3_transpt-like_TM_dom	2	180

External Links

No external refs found!

AT3G62270

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation