AT3G61950

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G61950

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00015p00239460	SPCH,...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
AT1G22490	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Aev_g10924	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g21755	FMA	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g25773	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03090	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene29143.t1	FMA, Aspi01Gene29143	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene60126.t1	FMA, Aspi01Gene60126	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g25240	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.23G002400.1	FMA, Ceric.23G002400	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.2	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Dcu_g17824	FMA	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g23650	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g30290	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_01096	FMA	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MA_686524g0010	FMA	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Msp_g43111	FMA	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g63342	FMA	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g63346	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012172	FMA	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0220.g026173	MUTE	not classified & original description: CDS=1-492	0.03	OrthoFinder output from all 47 species
Solyc01g080050.4.1	MUTE, Solyc01g080050	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Solyc03g007410.4.1	SPCH, Solyc03g007410	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e000161_P002	Zm00001e000161	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e023271_P001	Zm00001e023271	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e026643_P001	FMA, Zm00001e026643	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:2000024	regulation of leaf development	IEP	HCCA
BP	GO:2000039	regulation of trichome morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	176	226

External Links

No external refs found!

AT3G61950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation