AT3G59220 (PRN, PRN1, ATPIRIN1)

Aliases : PRN, PRN1, ATPIRIN1

Description : pirin

Gene families : OG0002091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002091_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G59220

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00186610	evm_27.TU.AmTr_v1...	Pirin-like protein OS=Solanum lycopersicum	0.04	OrthoFinder output from all 47 species
Adi_g097979	No alias	transcriptional co-regulator *(Pirin) & original...	0.02	OrthoFinder output from all 47 species
Aob_g07773	No alias	transcriptional co-regulator *(Pirin) & original...	0.03	OrthoFinder output from all 47 species
Aop_g39259	No alias	transcriptional co-regulator *(Pirin) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0011.g012617	No alias	transcriptional co-regulator *(Pirin) & original...	0.05	OrthoFinder output from all 47 species
Ceric.05G030000.1	Ceric.05G030000	transcriptional co-regulator *(Pirin) & original...	0.03	OrthoFinder output from all 47 species
Cre16.g674964	No alias	Pirin-like protein OS=Solanum lycopersicum	0.01	OrthoFinder output from all 47 species
Dac_g14581	No alias	transcriptional co-regulator *(Pirin) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01031671001	No alias	Pirin-like protein OS=Solanum lycopersicum	0.04	OrthoFinder output from all 47 species
GSVIVT01037758001	No alias	Pirin-like protein OS=Solanum lycopersicum	0.04	OrthoFinder output from all 47 species
Gb_07514	No alias	Pirin-like protein OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
Gb_37035	No alias	Pirin-like protein OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
LOC_Os03g62790.1	LOC_Os03g62790	Pirin-like protein OS=Solanum lycopersicum...	0.02	OrthoFinder output from all 47 species
LOC_Os08g27720.1	LOC_Os08g27720	Pirin-like protein OS=Solanum lycopersicum...	0.06	OrthoFinder output from all 47 species
MA_10061g0010	No alias	Pirin-like protein OS=Solanum lycopersicum...	0.02	OrthoFinder output from all 47 species
Ore_g10348	No alias	transcriptional co-regulator *(Pirin) & original...	0.01	OrthoFinder output from all 47 species
Pnu_g12267	No alias	transcriptional co-regulator *(Pirin) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002443	No alias	transcriptional co-regulator *(Pirin) & original...	0.03	OrthoFinder output from all 47 species
Smo446995	No alias	Pirin-like protein OS=Solanum lycopersicum	0.04	OrthoFinder output from all 47 species
Solyc09g098160.3.1	Solyc09g098160	Pirin-like protein OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc09g098180.4.1	Solyc09g098180	Pirin-like protein OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc12g014590.3.1	Solyc12g014590	Pirin-like protein At1g50590 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Spa_g25433	No alias	transcriptional co-regulator *(Pirin) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e004274_P001	Zm00001e004274	Pirin-like protein OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
Zm00001e025778_P001	Zm00001e025778	Pirin-like protein OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Zm00001e034512_P001	Zm00001e034512	Pirin-like protein At1g50590 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005516	calmodulin binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009645	response to low light intensity stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IMP	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009785	blue light signaling pathway	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	NAS	Interproscan
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transmembrane transport	RCA	Interproscan
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0030522	intracellular receptor signaling pathway	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071483	cellular response to blue light	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098661	inorganic anion transmembrane transport	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902025	nitrate import	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008172	S-methyltransferase activity	IEP	HCCA
BP	GO:0008300	isoprenoid catabolic process	IEP	HCCA
MF	GO:0008898	S-adenosylmethionine-homocysteine S-methyltransferase activity	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009806	lignan metabolic process	IEP	HCCA
BP	GO:0009807	lignan biosynthetic process	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0016103	diterpenoid catabolic process	IEP	HCCA
BP	GO:0016115	terpenoid catabolic process	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0045487	gibberellin catabolic process	IEP	HCCA
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008778	Pirin_C_dom	174	281
IPR003829	Pirin_N_dom	38	121

External Links

No external refs found!

AT3G59220 (PRN, PRN1, ATPIRIN1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation