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  5. AT3G59170

AT3G59170


Description : F-box/RNI-like superfamily protein


Gene families : OG0003469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G59170
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AT1G47920 No alias RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G48400 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from all 47 species
AT2G29930 No alias F-box/RNI-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.04 OrthoFinder output from all 47 species
AT3G44060 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G44080 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT3G44090 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT3G44180 No alias syntaxin-related family protein 0.02 OrthoFinder output from all 47 species
AT3G54160 No alias RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G59230 No alias RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G59240 No alias RNI-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT3G62440 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT4G13960 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G25860 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G38396 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G41630 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G41830 No alias RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
MF GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004449 isocitrate dehydrogenase (NAD+) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006102 isocitrate metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:1902652 secondary alcohol metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 12 43
IPR013101 Leu-rich_rpt_2 186 212
No external refs found!