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  5. AT3G58520

AT3G58520


Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG0001514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58520

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00179100 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aop_g18610 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g25571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g00927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12385 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01416 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g06882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_04492 No alias WTF9 mitochondrial RNA splicing factor 0.05 OrthoFinder output from all 47 species
LOC_Os01g18880.2 LOC_Os01g18880 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g07210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g019970.3.1 Solyc11g019970 no description available(sp|q9zuz6|wtf9_arath : 243.0) 0.04 OrthoFinder output from all 47 species
Spa_g04531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31693 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006573_P002 Zm00001e006573 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014695_P001 Zm00001e014695 no description available(sp|q9zuz6|wtf9_arath : 128.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 36 370
No external refs found!