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  5. AT3G56880

AT3G56880


Description : VQ motif-containing protein


Gene families : OG0000491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56880
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00175790 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00095p00177830 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g082777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03130 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00658 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g04355 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g50169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G024300.1 Ceric.22G024300 not classified & original description: pacid=50614461... 0.03 OrthoFinder output from all 47 species
Ehy_g04684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g07690.1 LOC_Os02g07690 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g20440.1 LOC_Os03g20440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g15249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_77606g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g44462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g021030 No alias not classified & original description: CDS=1-1164 0.03 OrthoFinder output from all 47 species
Spa_g07159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013751_P001 Zm00001e013751 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e022368_P001 Zm00001e022368 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e025135_P001 Zm00001e025135 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e039220_P001 Zm00001e039220 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004067 asparaginase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005769 early endosome IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006516 glycoprotein catabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006530 asparagine catabolic process IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009065 glutamine family amino acid catabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009068 aspartate family amino acid catabolic process IEP HCCA
BP GO:0009100 glycoprotein metabolic process IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009751 response to salicylic acid IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
CC GO:0010009 cytoplasmic side of endosome membrane IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033345 asparagine catabolic process via L-aspartate IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045022 early endosome to late endosome transport IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098562 cytoplasmic side of membrane IEP HCCA
BP GO:0098927 vesicle-mediated transport between endosomal compartments IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR008889 VQ 120 142
No external refs found!