AT3G56870


Description : unknown protein; Has 204 Blast hits to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).


Gene families : OG0004380 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004380_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56870

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00248170 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Ceric.07G010200.1 Ceric.07G010200 not classified & original description: pacid=50627972... 0.02 OrthoFinder output from all 47 species
Dcu_g18998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19139 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_25851 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g04690.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g30320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019231 No alias not classified & original description: CDS=15-2900 0.05 OrthoFinder output from all 47 species
Sam_g11841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017187_P001 Zm00001e017187 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e025613_P002 Zm00001e025613 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006346 DNA methylation-dependent heterochromatin formation RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle RCA Interproscan
BP GO:0016458 obsolete gene silencing RCA Interproscan
BP GO:0031048 RNA-mediated heterochromatin formation RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!