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  5. AT3G56110

AT3G56110 (PRA1.B1)


Aliases : PRA1.B1

Description : prenylated RAB acceptor 1.B1


Gene families : OG0000542 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000542_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56110
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Adi_g001562 PRA7, PRA1.F2 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52368 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g00478 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g01946 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g53070.1 PRA1.E, LOC_Os03g53070 B-G-class Rab-GDF protein 0.03 OrthoFinder output from all 47 species
LOC_Os05g11120.1 PRA1.F3, PRA8,... B-G-class Rab-GDF protein 0.01 OrthoFinder output from all 47 species
LOC_Os11g01610.1 PRA1.B3, LOC_Os11g01610 B-G-class Rab-GDF protein 0.01 OrthoFinder output from all 47 species
Len_g04564 PRA1.B2 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g40380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17171 PRA1.B4 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005783 endoplasmic reticulum IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
BP GO:0016192 vesicle-mediated transport IDA Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006986 response to unfolded protein IEP HCCA
BP GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009627 systemic acquired resistance IEP HCCA
BP GO:0009696 salicylic acid metabolic process IEP HCCA
BP GO:0009697 salicylic acid biosynthetic process IEP HCCA
BP GO:0009720 detection of hormone stimulus IEP HCCA
BP GO:0009726 detection of endogenous stimulus IEP HCCA
BP GO:0009729 detection of brassinosteroid stimulus IEP HCCA
BP GO:0009742 brassinosteroid mediated signaling pathway IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018958 phenol-containing compound metabolic process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031348 negative regulation of defense response IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
BP GO:0032386 regulation of intracellular transport IEP HCCA
BP GO:0032388 positive regulation of intracellular transport IEP HCCA
MF GO:0032451 demethylase activity IEP HCCA
MF GO:0032452 histone demethylase activity IEP HCCA
MF GO:0032454 histone H3K9 demethylase activity IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0032922 circadian regulation of gene expression IEP HCCA
BP GO:0033157 regulation of intracellular protein transport IEP HCCA
BP GO:0033169 histone H3-K9 demethylation IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042537 benzene-containing compound metabolic process IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0043401 steroid hormone mediated signaling pathway IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046189 phenol-containing compound biosynthetic process IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
BP GO:0046822 regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046825 regulation of protein export from nucleus IEP HCCA
BP GO:0046827 positive regulation of protein export from nucleus IEP HCCA
CC GO:0048471 perinuclear region of cytoplasm IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051222 positive regulation of protein transport IEP HCCA
BP GO:0051223 regulation of protein transport IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070201 regulation of establishment of protein localization IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090316 positive regulation of intracellular protein transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140457 protein demethylase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1903829 positive regulation of protein localization IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1904951 positive regulation of establishment of protein localization IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
InterPro domains Description Start Stop
IPR004895 Prenylated_rab_accept_PRA1 40 183
No external refs found!