AT3G55460 (SCL30, At-SCL30)

Aliases : SCL30, At-SCL30

Description : SC35-like splicing factor 30

Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55460

Target	Alias	Description	ECC score	Gene Family Method
Adi_g014842	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12283	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g69799	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000402.16	At-SCL30A, SCL30A	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Cre13.g586916	At-SCL28, SCL28	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Dcu_g07366	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g18442	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g14064	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016562001	SCL30, At-SCL30	RNA processing.RNA splicing.spliceosome-associated...	0.04	OrthoFinder output from all 47 species
GSVIVT01022010001	At-SCL28, SCL28	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
GSVIVT01025432001	At-SCL30A, SCL30A	Serine/arginine-rich SC35-like splicing factor SCL30A...	0.04	OrthoFinder output from all 47 species
LOC_Os02g15310.1	SCL30, At-SCL30,...	SCL28/30/33 RNA splicing factor	0.05	OrthoFinder output from all 47 species
LOC_Os03g24890.1	At-SCL28, SCL28,...	SCL28/30/33 RNA splicing factor	0.02	OrthoFinder output from all 47 species
LOC_Os12g38430.1	SCL30, At-SCL30,...	SCL28/30/33 RNA splicing factor	0.03	OrthoFinder output from all 47 species
Lfl_g10747	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g14090	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g02221	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05645	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g10815	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g10827	No alias	RNA splicing factor *(SCL28/30/33) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g50711	No alias	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g11978	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29764	At-SCL30A, SCL30A	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Tin_g05076	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g46163	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002967_P002	SCL30, At-SCL30,...	SCL28/30/33 RNA splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
BP	GO:0000398	mRNA splicing, via spliceosome	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IDA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
CC	GO:0005956	protein kinase CK2 complex	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0035061	interchromatin granule	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044030	regulation of DNA methylation	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1902554	serine/threonine protein kinase complex	IEP	HCCA
CC	GO:1902911	protein kinase complex	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	49	118

External Links

No external refs found!

AT3G55460 (SCL30, At-SCL30)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation