AT3G55370 (OBP3)

Aliases : OBP3

Description : OBF-binding protein 3

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55370
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	TMO6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00264070	CDF3,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00012p00176640	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00069p00049300	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AMTR_s00160p00038440	HCA2, DOF5.6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
AT1G07640	OBP2	Dof-type zinc finger DNA-binding family protein	0.04	OrthoFinder output from all 47 species
Adi_g113482	CDF3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g08221	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g27970	OBP3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g28711	No alias	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g11407	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g40320	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03345	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04770	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09129	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g27889	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g28279	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016538001	OBP3	RNA biosynthesis.transcriptional activation.C2C2...	0.06	OrthoFinder output from all 47 species
GSVIVT01021086001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
GSVIVT01021212001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
GSVIVT01025119001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	OrthoFinder output from all 47 species
Gb_12877	HCA2, DOF5.6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Gb_20144	HCA2, DOF5.6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os01g64590.1	LOC_Os01g64590	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
LOC_Os03g16850.1	OBP3, LOC_Os03g16850	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os03g60630.1	LOC_Os03g60630	transcription factor (DOF)	0.07	OrthoFinder output from all 47 species
LOC_Os05g02150.1	OBP3, LOC_Os05g02150	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os05g36900.1	LOC_Os05g36900	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
LOC_Os07g32510.1	TMO6, LOC_Os07g32510	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os10g26620.1	CDF1, LOC_Os10g26620	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os12g38200.1	LOC_Os12g38200	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Lfl_g17744	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
MA_83624g0010	TMO6	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Msp_g25677	DAG1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25217	OBP4	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g26476	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g52876	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g06441	CDF2	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g53347	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g61765	DAG1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008681	ADOF1, DOF1	transcription factor *(DOF) & original description: CDS=453-2084	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023228	No alias	transcription factor *(DOF) & original description: CDS=1-1353	0.03	OrthoFinder output from all 47 species
Sam_g50151	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g096120.3.1	DAG1, Solyc01g096120	transcription factor (DOF)	0.07	OrthoFinder output from all 47 species
Solyc02g077950.3.1	Solyc02g077950	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc02g090220.3.1	OBP1, Solyc02g090220	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc03g112930.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc03g121400.1.1	ADOF2, DOF2,...	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Solyc04g079570.1.1	OBP1, Solyc04g079570	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc06g071480.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc06g076030.3.1	Solyc06g076030	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc08g082910.2.1	Solyc08g082910	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc09g010680.3.1	Solyc09g010680	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Solyc10g086440.2.1	DOF2.4,...	transcription factor (DOF)	0.08	OrthoFinder output from all 47 species
Solyc11g066050.1.1	Solyc11g066050	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Solyc11g072500.2.1	TMO6, Solyc11g072500	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Spa_g29090	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004476_P002	Zm00001e004476	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e006190_P001	Zm00001e006190	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e010454_P001	TMO6, Zm00001e010454	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e011750_P002	Zm00001e011750	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e015414_P004	Zm00001e015414	transcription factor (DOF)	0.07	OrthoFinder output from all 47 species
Zm00001e015597_P001	HCA2, DOF5.6,...	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Zm00001e016572_P001	ADOF1, DOF1,...	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e018163_P001	Zm00001e018163	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e023218_P004	Zm00001e023218	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e023334_P001	HCA2, DOF5.6,...	transcription factor (DOF)	0.07	OrthoFinder output from all 47 species
Zm00001e027411_P001	Zm00001e027411	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e027634_P002	OBP3, Zm00001e027634	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Zm00001e029641_P001	OBP3, Zm00001e029641	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Zm00001e035074_P001	TMO6, Zm00001e035074	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e041944_P001	Zm00001e041944	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IMP	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0009682	induced systemic resistance	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	75	130

External Links

No external refs found!

AT3G55370 (OBP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation