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AT3G55200


Description : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein


Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G55200

Target Alias Description ECC score Gene Family Method Actions
Ala_g02677 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Als_g03253 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aop_g07573 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01005970001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Lfl_g36606 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Sam_g07166 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Solyc04g010260.3.1 Solyc04g010260 component SF3B3 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009555 pollen development IMP Interproscan
BP GO:0009846 pollen germination IMP Interproscan
BP GO:0048481 plant ovule development IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 861 1180
No external refs found!