AT3G54670 (TTN8, ATSMC1, SMC1)

Aliases : TTN8, ATSMC1, SMC1

Description : Structural maintenance of chromosomes (SMC) family protein

Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54670

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00208430	TTN8, ATSMC1,...	Cell cycle.mitosis and meiosis.sister chromatid...	0.06	OrthoFinder output from all 47 species
AMTR_s00047p00208850	TTN8, ATSMC1,...	Cell cycle.mitosis and meiosis.sister chromatid...	0.06	OrthoFinder output from all 47 species
Adi_g010815	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.05	OrthoFinder output from all 47 species
Ala_g02668	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Als_g01964	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.06	OrthoFinder output from all 47 species
Aob_g04491	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Azfi_s0002.g001113	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.05	OrthoFinder output from all 47 species
Cba_g04090	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Ceric.32G063300.1	TTN8, ATSMC1,...	component *(SMC1/TTN8) of cohesin regulator complex &...	0.06	OrthoFinder output from all 47 species
Cre15.g635800	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.01	OrthoFinder output from all 47 species
Ehy_g01679	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01028343001	TTN8, ATSMC1, SMC1	Cell cycle.mitosis and meiosis.sister chromatid...	0.09	OrthoFinder output from all 47 species
LOC_Os12g44390.1	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.07	OrthoFinder output from all 47 species
Lfl_g03468	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
MA_10429667g0010	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.06	OrthoFinder output from all 47 species
Msp_g15568	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Nbi_g02483	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Ore_g13217	TTN8, ATSMC1, SMC1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g01407	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012930	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Sam_g07221	No alias	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Smo236008	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes protein 1...	0.02	OrthoFinder output from all 47 species
Solyc06g083870.3.1	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.08	OrthoFinder output from all 47 species
Spa_g10305	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Tin_g02901	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e003843_P001	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
BP	GO:0000278	mitotic cell cycle	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006396	RNA processing	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007059	chromosome segregation	ISS	Interproscan
BP	GO:0007062	sister chromatid cohesion	IMP	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008278	cohesin complex	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010073	meristem maintenance	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010638	positive regulation of organelle organization	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005652	nuclear lamina	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
CC	GO:0016363	nuclear matrix	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
CC	GO:0034399	nuclear periphery	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA
BP	GO:2000023	regulation of lateral root development	IEP	HCCA
BP	GO:2000069	regulation of post-embryonic root development	IEP	HCCA
BP	GO:2000280	regulation of root development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	11	1220
IPR010935	SMC_hinge	518	652

External Links

No external refs found!

AT3G54670 (TTN8, ATSMC1, SMC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation