AT3G54630

Description : CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink).

Gene families : OG0005714 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005714_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54630
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
Ala_g33371	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.04	OrthoFinder output from all 47 species
Als_g05052	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.09	OrthoFinder output from all 47 species
Aop_g08964	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.1	OrthoFinder output from all 47 species
Azfi_s0004.g008544	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.06	OrthoFinder output from all 47 species
Ceric.39G004100.1	Ceric.39G004100	component *(NDC80) of NDC80 outer kinetochore complex &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021621.13	No alias	Cell cycle.mitosis and meiosis.chromosome...	0.08	OrthoFinder output from all 47 species
Cre02.g098300	No alias	Cell cycle.mitosis and meiosis.chromosome...	0.04	OrthoFinder output from all 47 species
Dcu_g10017	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.09	OrthoFinder output from all 47 species
GSVIVT01023023001	No alias	Cell cycle.mitosis and meiosis.chromosome...	0.02	OrthoFinder output from all 47 species
Gb_08872	No alias	component NDC80 of NDC80 outer kinetochore complex	0.11	OrthoFinder output from all 47 species
LOC_Os08g36490.1	LOC_Os08g36490	component NDC80 of NDC80 outer kinetochore complex	0.03	OrthoFinder output from all 47 species
MA_10432519g0010	No alias	component NDC80 of NDC80 outer kinetochore complex	0.02	OrthoFinder output from all 47 species
Mp2g14660.1	No alias	component NDC80 of NDC80 outer kinetochore complex	0.05	OrthoFinder output from all 47 species
Msp_g07559	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.15	OrthoFinder output from all 47 species
Nbi_g11443	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.1	OrthoFinder output from all 47 species
Ppi_g12827	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009856	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.04	OrthoFinder output from all 47 species
Solyc01g104520.3.1	Solyc01g104520	component NDC80 of NDC80 outer kinetochore complex	0.07	OrthoFinder output from all 47 species
Solyc01g104570.4.1	Solyc01g104570	component NDC80 of NDC80 outer kinetochore complex	0.08	OrthoFinder output from all 47 species
Tin_g04628	No alias	component *(NDC80) of NDC80 outer kinetochore complex &...	0.05	OrthoFinder output from all 47 species
Zm00001e003996_P001	Zm00001e003996	component NDC80 of NDC80 outer kinetochore complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	RCA	Interproscan
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0008283	cell population proliferation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010564	regulation of cell cycle process	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048449	floral organ formation	None	Extended
BP	GO:0048451	petal formation	RCA	Interproscan
BP	GO:0048453	sepal formation	RCA	Interproscan
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1905393	plant organ formation	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000912	assembly of actomyosin apparatus involved in cytokinesis	IEP	HCCA
BP	GO:0000914	phragmoplast assembly	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006279	premeiotic DNA replication	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
MF	GO:0019187	beta-1,4-mannosyltransferase activity	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031109	microtubule polymerization or depolymerization	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032506	cytokinetic process	IEP	HCCA
BP	GO:0033260	nuclear DNA replication	IEP	HCCA
MF	GO:0035173	histone kinase activity	IEP	HCCA
MF	GO:0035184	histone threonine kinase activity	IEP	HCCA
MF	GO:0035402	histone H3T11 kinase activity	IEP	HCCA
BP	GO:0035407	obsolete histone H3-T11 phosphorylation	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0046785	microtubule polymerization	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048768	root hair cell tip growth	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051258	protein polymerization	IEP	HCCA
MF	GO:0051753	mannan synthase activity	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
MF	GO:0072354	histone H3T3 kinase activity	IEP	HCCA
BP	GO:0072355	obsolete histone H3-T3 phosphorylation	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902407	assembly of actomyosin apparatus involved in mitotic cytokinesis	IEP	HCCA
BP	GO:1902410	mitotic cytokinetic process	IEP	HCCA
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005550	Kinetochore_Ndc80	28	169

External Links

No external refs found!

AT3G54630

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation