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  5. AT3G54430

AT3G54430 (SRS6)


Aliases : SRS6

Description : SHI-related sequence 6


Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G54430

Target Alias Description ECC score Gene Family Method Actions
AT1G19790 SRS7 SHI-related sequence 7 0.05 OrthoFinder output from all 47 species
Aev_g21092 LRP1 SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23682 SRS1, STY1 SRS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27015 SRS1, STY1 SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40676 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02264 SHI SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15703 SHI SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31420 SHI SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013486001 LRP1 RNA biosynthesis.transcriptional activation.SRS... 0.04 OrthoFinder output from all 47 species
Zm00001e034798_P001 SRS1, STY1,... transcription factor (SRS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005697 telomerase holoenzyme complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010375 stomatal complex patterning IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
CC GO:0015630 microtubule cytoskeleton IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032206 positive regulation of telomere maintenance IEP HCCA
BP GO:0032210 regulation of telomere maintenance via telomerase IEP HCCA
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP HCCA
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP HCCA
BP GO:2000278 regulation of DNA biosynthetic process IEP HCCA
BP GO:2000573 positive regulation of DNA biosynthetic process IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA

No InterPro domains available for this sequence

No external refs found!