AT3G54390

Description : sequence-specific DNA binding transcription factors

Gene families : OG0003905 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003905_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54390

Target	Alias	Description	ECC score	Gene Family Method
Aev_g09315	No alias	Trihelix-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Gb_02173	No alias	transcription factor (Trihelix)	0.04	OrthoFinder output from all 47 species
MA_101681g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_8062124g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010152	pollen maturation	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G54390

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation