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AT3G54200


Description : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family


Gene families : OG0000463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G54200

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00241150 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g027937 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41933.t1 Aspi01Gene41933 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58688.t1 Aspi01Gene58688 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G006900.1 Ceric.05G006900 not classified & original description: pacid=50578077... 0.03 OrthoFinder output from all 47 species
Dac_g08901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02625 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_17490 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g45070.1 LOC_Os05g45070 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g02730.1 LOC_Os11g02730 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g15470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g06270.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g02660.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021071 No alias not classified & original description: CDS=1-585 0.04 OrthoFinder output from all 47 species
Solyc02g092400.1.1 Solyc02g092400 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g49466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027143_P001 Zm00001e027143 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0046658 obsolete anchored component of plasma membrane IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009753 response to jasmonic acid IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0030148 sphingolipid biosynthetic process IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0045140 inositol phosphoceramide synthase activity IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0070542 response to fatty acid IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR004864 LEA_2 115 213
No external refs found!