AT3G53260 (ATPAL2, PAL2)

Aliases : ATPAL2, PAL2

Description : phenylalanine ammonia-lyase 2

Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53260
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00201680	ATPAL2, PAL2,...	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
AMTR_s00024p00202590	ATPAL2, PAL2,...	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
AMTR_s00032p00159210	PAL4,...	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
AMTR_s00148p00088930	ATPAL1, PAL1,...	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.06	OrthoFinder output from all 47 species
Adi_g005788	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g059368	ATPAL1, PAL1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g39213	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g30887	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g38575	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05640.t1	PAL4, Aspi01Gene05640	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.14G035000.1	PAL4, Ceric.14G035000	EC_4.3 carbon-nitrogen lyase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.28G008000.1	PAL4, Ceric.28G008000	EC_4.3 carbon-nitrogen lyase & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.28G008100.1	PAL4, Ceric.28G008100	EC_4.3 carbon-nitrogen lyase & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.35G045000.1	PAL4, Ceric.35G045000	EC_4.3 carbon-nitrogen lyase & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g01768	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g25215	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016257001	ATPAL2, PAL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.1	OrthoFinder output from all 47 species
GSVIVT01025214001	ATPAL1, PAL1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.05	OrthoFinder output from all 47 species
GSVIVT01025703001	ATPAL2, PAL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.08	OrthoFinder output from all 47 species
Gb_16672	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Gb_25608	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.09	OrthoFinder output from all 47 species
LOC_Os02g41630.2	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
LOC_Os02g41650.3	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.07	OrthoFinder output from all 47 species
LOC_Os04g43760.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.09	OrthoFinder output from all 47 species
Len_g50108	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g14564	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
MA_10429279g0010	PAL4	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
MA_123220g0010	ATPAL2, PAL2	phenylalanine ammonia lyase (PAL)	0.07	OrthoFinder output from all 47 species
Mp1g05190.1	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.02	OrthoFinder output from all 47 species
Mp4g14110.1	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
Mp4g14130.1	ATPAL2, PAL2	Phenylalanine ammonia-lyase class 1 (Fragment)...	0.03	OrthoFinder output from all 47 species
Mp4g14140.1	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Mp4g14160.1	ATPAL2, PAL2	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
Mp4g14170.1	PAL4	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Msp_g33722	ATPAL1, PAL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10582	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g10300	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g35799	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g40543	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44841	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11790	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g26446	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g17800	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Smo424403	ATPAL2, PAL2	Phenylalanine ammonia-lyase OS=Citrus limon	0.05	OrthoFinder output from all 47 species
Solyc05g056170.3.1	ATPAL2, PAL2,...	phenylalanine ammonia lyase (PAL)	0.07	OrthoFinder output from all 47 species
Solyc09g007910.4.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.06	OrthoFinder output from all 47 species
Spa_g08001	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g16564	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26458	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10052	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g14732	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e015155_P001	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
Zm00001e015157_P001	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.05	OrthoFinder output from all 47 species
Zm00001e023033_P001	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006575	cellular modified amino acid metabolic process	None	Extended
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006595	polyamine metabolic process	None	Extended
BP	GO:0006598	polyamine catabolic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	TAS	Interproscan
BP	GO:0006979	response to oxidative stress	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009310	amine catabolic process	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009611	response to wounding	TAS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	RCA	Interproscan
BP	GO:0009699	phenylpropanoid biosynthetic process	TAS	Interproscan
BP	GO:0009804	coumarin metabolic process	None	Extended
BP	GO:0009805	coumarin biosynthetic process	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016840	carbon-nitrogen lyase activity	None	Extended
MF	GO:0016841	ammonia-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0042398	cellular modified amino acid biosynthetic process	RCA	Interproscan
BP	GO:0042402	cellular biogenic amine catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
MF	GO:0045548	phenylalanine ammonia-lyase activity	ISS	Interproscan
MF	GO:0045548	phenylalanine ammonia-lyase activity	TAS	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080167	response to karrikin	IEP	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	HCCA
MF	GO:0003866	3-phosphoshikimate 1-carboxyvinyltransferase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009423	chorismate biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009819	drought recovery	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016710	trans-cinnamate 4-monooxygenase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
BP	GO:0018920	glyphosate metabolic process	IEP	HCCA
BP	GO:0019336	phenol-containing compound catabolic process	IEP	HCCA
BP	GO:0019632	shikimate metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046244	salicylic acid catabolic process	IEP	HCCA
BP	GO:0046271	phenylpropanoid catabolic process	IEP	HCCA
BP	GO:0046274	lignin catabolic process	IEP	HCCA
BP	GO:0046417	chorismate metabolic process	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001106	Aromatic_Lyase	64	538

External Links

No external refs found!

AT3G53260 (ATPAL2, PAL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation