AT3G53230

Description : ATPase, AAA-type, CDC48 protein

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53230
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
Adi_g114666	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g21367	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Als_g38557	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02580	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g67891	CDC48A, CDC48, ATCDC48	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g77518	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.14G014100.1	Ceric.14G014100	platform ATPase CDC48 & original description:...	0.01	OrthoFinder output from all 47 species
Dcu_g08248	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09095	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g40907	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g068330.4.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species
Solyc10g084050.2.1	Solyc10g084050	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species
Spa_g22537	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042176	regulation of protein catabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0045732	positive regulation of protein catabolic process	IDA	Interproscan
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	HCCA
MF	GO:0005460	UDP-glucose transmembrane transporter activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0009691	cytokinin biosynthetic process	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
CC	GO:0030173	obsolete integral component of Golgi membrane	IEP	HCCA
CC	GO:0030176	obsolete integral component of endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0042542	response to hydrogen peroxide	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	518	651
IPR003959	ATPase_AAA_core	245	374
IPR003338	CDC4_N-term_subdom	30	111
IPR004201	Cdc48_dom2	132	195

External Links

No external refs found!

AT3G53230

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation