AT3G53170

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00203740	EMB2453, ATPPR5,...	Pentatricopeptide repeat-containing protein At4g39620,...	0.02	OrthoFinder output from all 47 species
AMTR_s00025p00175980	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g48730,...	0.02	OrthoFinder output from all 47 species
AT3G06430	EMB2750	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	OrthoFinder output from all 47 species
Als_g33753	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene36337.t1	EMB2453, ATPPR5,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene69174.t1	EMB2750, Aspi01Gene69174	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0174.g055903	EMB2453, ATPPR5	not classified & original description: CDS=133-1563	0.01	OrthoFinder output from all 47 species
Azfi_s0466.g072796	No alias	not classified & original description: CDS=82-1554	0.01	OrthoFinder output from all 47 species
Ceric.21G045800.1	EMB2453, ATPPR5,...	not classified & original description: pacid=50604035...	0.04	OrthoFinder output from all 47 species
Dac_g11531	EMB2453, ATPPR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01190	EMB2453, ATPPR5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g02809	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Dde_g08087	EMB2453, ATPPR5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01017677001	EMB2750	Pentatricopeptide repeat-containing protein At3g06430,...	0.02	OrthoFinder output from all 47 species
GSVIVT01028689001	No alias	Pentatricopeptide repeat-containing protein At5g48730,...	0.04	OrthoFinder output from all 47 species
GSVIVT01032162001	No alias	Pentatricopeptide repeat-containing protein At3g53170...	0.2	OrthoFinder output from all 47 species
Gb_36199	EMB2453, ATPPR5	Pentatricopeptide repeat-containing protein At4g39620,...	0.01	OrthoFinder output from all 47 species
Gb_37344	No alias	Pentatricopeptide repeat-containing protein At5g48730,...	0.03	OrthoFinder output from all 47 species
LOC_Os02g51480.1	EMB2453, ATPPR5,...	Pentatricopeptide repeat-containing protein PPR5...	0.08	OrthoFinder output from all 47 species
LOC_Os03g02430.1	LOC_Os03g02430	Pentatricopeptide repeat-containing protein At3g53170...	0.06	OrthoFinder output from all 47 species
LOC_Os03g19650.3	EMB2750, LOC_Os03g19650	Pentatricopeptide repeat-containing protein At3g06430,...	0.07	OrthoFinder output from all 47 species
LOC_Os06g07550.1	LOC_Os06g07550	Pentatricopeptide repeat-containing protein At5g48730,...	0.05	OrthoFinder output from all 47 species
Lfl_g02007	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g27398	EMB2453, ATPPR5	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g07398	EMB2453, ATPPR5	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Ore_g09304	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g16720	EMB2453, ATPPR5	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g30371	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g20163	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g31202	EMB2453, ATPPR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g02226	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g11535	EMB2453, ATPPR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075	No alias	not classified & original description: CDS=33-1412	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017959	EMB2453, ATPPR5	not classified & original description: CDS=1-1101	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s3064.g028587	EMB2453, ATPPR5	not classified & original description: CDS=1-1023	0.02	OrthoFinder output from all 47 species
Sam_g13579	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g51172	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo135826	No alias	Pentatricopeptide repeat-containing protein At4g39620,...	0.03	OrthoFinder output from all 47 species
Solyc01g006500.4.1	Solyc01g006500	Pentatricopeptide repeat-containing protein At5g48730,...	0.02	OrthoFinder output from all 47 species
Solyc04g054270.4.1	EMB2453, ATPPR5,...	Pentatricopeptide repeat-containing protein PPR5...	0.02	OrthoFinder output from all 47 species
Solyc08g045780.4.1	Solyc08g045780	Pentatricopeptide repeat-containing protein At3g53170...	0.02	OrthoFinder output from all 47 species
Solyc12g098990.2.1	EMB2750, Solyc12g098990	Pentatricopeptide repeat-containing protein At3g06430,...	0.01	OrthoFinder output from all 47 species
Tin_g00939	EMB2453, ATPPR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g36742	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e023883_P001	EMB2453, ATPPR5,...	Pentatricopeptide repeat-containing protein PPR5,...	0.02	OrthoFinder output from all 47 species
Zm00001e031052_P001	Zm00001e031052	Pentatricopeptide repeat-containing protein At5g48730,...	0.1	OrthoFinder output from all 47 species
Zm00001e032726_P001	EMB2750, Zm00001e032726	Pentatricopeptide repeat-containing protein At3g06430,...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	355	403
IPR002885	Pentatricopeptide_repeat	426	471
IPR002885	Pentatricopeptide_repeat	177	227
IPR002885	Pentatricopeptide_repeat	251	280
IPR002885	Pentatricopeptide_repeat	288	317
IPR002885	Pentatricopeptide_repeat	146	175
IPR002885	Pentatricopeptide_repeat	323	350

External Links

No external refs found!

AT3G53170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation