AT3G53020 (STV1, RPL24, RPL24B)

Aliases : STV1, RPL24, RPL24B

Description : Ribosomal protein L24e family protein

Gene families : OG0002539 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002539_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53020

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00095150	RPL24A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	OrthoFinder output from all 47 species
AMTR_s00119p00055300	RPL24A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Adi_g016157	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Adi_g039871	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ala_g20428	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Ala_g22691	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Als_g23672	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g25230	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g44809	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aob_g00606	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g07149	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Aop_g22551	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aspi01Gene21349.t1	RPL24A, Aspi01Gene21349	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0081.g038645	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Cba_g10268	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g26139	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.24G022200.1	RPL24A, Ceric.24G022200	component *(eL24) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Ceric.27G010000.1	STV1, RPL24,...	component *(eL24) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001093.9	STV1, RPL24, RPL24B	No description available	0.22	OrthoFinder output from all 47 species
Cre09.g391097	STV1, RPL24, RPL24B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.44	OrthoFinder output from all 47 species
Dac_g13575	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Dac_g29270	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Dcu_g14497	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g45784	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Dde_g12301	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g05371	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g21948	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
GSVIVT01010601001	RPL24A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.42	OrthoFinder output from all 47 species
GSVIVT01033743001	STV1, RPL24, RPL24B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
GSVIVT01034676001	RPL24A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Gb_07396	STV1, RPL24, RPL24B	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.11	OrthoFinder output from all 47 species
LOC_Os01g59990.1	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.25	OrthoFinder output from all 47 species
LOC_Os07g12250.1	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.25	OrthoFinder output from all 47 species
Lfl_g00331	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g26179	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_13787g0010	RPL24A	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_14639g0010	STV1, RPL24, RPL24B	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.04	OrthoFinder output from all 47 species
Mp5g17510.1	RPL24A	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.36	OrthoFinder output from all 47 species
Msp_g04603	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Msp_g35018	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g00286	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g10553	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pnu_g22076	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c13_10770V3.1	RPL24A, Pp3c13_10770	ribosomal protein L24	0.25	OrthoFinder output from all 47 species
Pp3c3_8930V3.1	RPL24A, Pp3c3_8930	Ribosomal protein L24e family protein	0.11	OrthoFinder output from all 47 species
Pp3c4_25160V3.1	RPL24A, Pp3c4_25160	ribosomal protein L24	0.13	OrthoFinder output from all 47 species
Ppi_g06076	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g18242	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004929	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g04326	No alias	component *(eL24) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Sam_g06345	No alias	component *(eL24) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g06964	No alias	component *(eL24) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Smo438784	STV1, RPL24, RPL24B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc09g008800.3.1	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.3	OrthoFinder output from all 47 species
Solyc10g083740.3.1	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.27	OrthoFinder output from all 47 species
Solyc10g085480.2.1	RPL24A, Solyc10g085480	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.12	OrthoFinder output from all 47 species
Spa_g03066	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Spa_g08054	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g31362	RPL24A	component *(eL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g23099	STV1, RPL24, RPL24B	component *(eL24) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Zm00001e004947_P001	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.45	OrthoFinder output from all 47 species
Zm00001e012463_P004	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.42	OrthoFinder output from all 47 species
Zm00001e027315_P001	STV1, RPL24,...	pri-miRNA recruitment factor (STV1). component RPL24 of...	0.24	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009734	auxin-activated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048438	floral whorl development	None	Extended
BP	GO:0048467	gynoecium development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000988	Ribosomal_L24e-rel	4	67

External Links

No external refs found!

AT3G53020 (STV1, RPL24, RPL24B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation