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  5. AT3G52630

AT3G52630


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG0005363 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005363_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G52630
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Ceric.04G020400.1 Ceric.04G020400 component *(RPA3) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Ceric.21G026100.1 Ceric.21G026100 component *(RPA3) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000718.65 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder output from all 47 species
Dde_g04150 No alias component *(RPA3) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
GSVIVT01000981001 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.05 OrthoFinder output from all 47 species
Gb_31704 No alias component RPA3 of single-stranded-DNA binding RPA... 0.12 OrthoFinder output from all 47 species
Gb_36734 No alias component RPA3 of single-stranded-DNA binding RPA... 0.09 OrthoFinder output from all 47 species
Lfl_g24472 No alias component *(RPA3) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Mp8g07790.1 No alias component RPA3 of single-stranded-DNA binding RPA... 0.08 OrthoFinder output from all 47 species
Ore_g41981 No alias component *(RPA3) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Pp3c2_28010V3.1 Pp3c2_28010 Nucleic acid-binding, OB-fold-like protein 0.02 OrthoFinder output from all 47 species
Solyc10g081210.3.1 Solyc10g081210 component RPA3 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species
Spa_g18698 No alias component *(RPA3) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Tin_g00374 No alias component *(RPA3) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004170 dUTP diphosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005640 nuclear outer membrane IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0016048 detection of temperature stimulus IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019692 deoxyribose phosphate metabolic process IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
CC GO:0031965 nuclear membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR013970 Rfa2 1 102
No external refs found!