AT3G51060 (SRS1, STY1)

Aliases : SRS1, STY1

Description : Lateral root primordium (LRP) protein-related

Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G51060

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00063p00161200	LRP1,...	RNA biosynthesis.transcriptional activation.SRS...	0.07	OrthoFinder output from all 47 species
Adi_g045239	SRS7	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g045684	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g069569	LRP1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g077130	SRS1, STY1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g085909	SRS1, STY1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g106034	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g17440	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g46734	SRS7	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32332.t1	SHI, Aspi01Gene32332	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035783	SHI	SRS-type transcription factor & original description: CDS=1-2148	0.08	OrthoFinder output from all 47 species
Azfi_s0092.g043005	SRS5	SRS-type transcription factor & original description: CDS=39-1118	0.02	OrthoFinder output from all 47 species
Azfi_s0861.g090073	SHI	SRS-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.32G058400.1	SRS1, STY1,...	SRS-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g40676	SHI	SRS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g30563	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g47477	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g15703	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009812001	SRS5	RNA biosynthesis.transcriptional activation.SRS...	0.08	OrthoFinder output from all 47 species
GSVIVT01024206001	SHI	RNA biosynthesis.transcriptional activation.SRS...	0.05	OrthoFinder output from all 47 species
LOC_Os01g72490.1	LRP1, LOC_Os01g72490	transcription factor (SRS)	0.07	OrthoFinder output from all 47 species
LOC_Os06g49830.1	SRS1, STY1,...	transcription factor (SRS)	0.04	OrthoFinder output from all 47 species
LOC_Os08g43410.1	SRS1, STY1,...	transcription factor (SRS)	0.06	OrthoFinder output from all 47 species
LOC_Os09g36160.1	SRS1, STY1,...	transcription factor (SRS)	0.04	OrthoFinder output from all 47 species
Len_g33081	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_2299g0010	LRP1	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Pir_g48067	LRP1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16685	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g59296	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007215	SHI	SRS-type transcription factor & original description: CDS=1-2160	0.04	OrthoFinder output from all 47 species
Solyc10g054070.1.1	SRS5, Solyc10g054070	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Tin_g29778	SRS1, STY1	SRS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g30774	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e010227_P001	SRS1, STY1,...	transcription factor (SRS)	0.07	OrthoFinder output from all 47 species
Zm00001e013256_P002	SHI, Zm00001e013256	transcription factor (SRS)	0.04	OrthoFinder output from all 47 species
Zm00001e024681_P001	SHI, Zm00001e024681	transcription factor (SRS)	0.05	OrthoFinder output from all 47 species
Zm00001e026854_P001	SHI, Zm00001e026854	transcription factor (SRS)	0.06	OrthoFinder output from all 47 species
Zm00001e028304_P001	LRP1, Zm00001e028304	transcription factor (SRS)	0.07	OrthoFinder output from all 47 species
Zm00001e030189_P001	SHI, Zm00001e030189	transcription factor (SRS)	0.06	OrthoFinder output from all 47 species
Zm00001e031567_P001	LRP1, Zm00001e031567	transcription factor (SRS)	0.08	OrthoFinder output from all 47 species
Zm00001e034798_P001	SRS1, STY1,...	transcription factor (SRS)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	NAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	None	Extended
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	NAS	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	IGI	Interproscan
BP	GO:0010252	auxin homeostasis	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046982	protein heterodimerization activity	IPI	Interproscan
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048479	style development	IGI	Interproscan
BP	GO:0048480	stigma development	IGI	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005102	signaling receptor binding	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010052	guard cell differentiation	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010374	stomatal complex development	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0090558	plant epidermis development	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G51060 (SRS1, STY1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation