AT3G48930 (EMB1080)

Aliases : EMB1080

Description : Nucleic acid-binding, OB-fold-like protein

Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G48930
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00158320	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
AMTR_s00046p00028310	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
Adi_g014139	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Adi_g021180	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Adi_g021181	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Adi_g095793	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g115558	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Adi_g127076	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g00374	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g17880	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ala_g34347	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Als_g45583	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g57630	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g63595	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aob_g06312	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Aop_g00917	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g40420	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Aspi01Gene71269.t1	RPS11-BETA,...	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene71270.t1	Aspi01Gene71270	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0268.g061080	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.26	OrthoFinder output from all 47 species
Cba_g17409	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g28522	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.02G042300.1	Ceric.02G042300	component *(uS17) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Ceric.06G039400.1	Ceric.06G039400	component *(uS17) of small ribosomal-subunit (SSU)...	0.35	OrthoFinder output from all 47 species
Ceric.27G062600.1	Ceric.27G062600	component *(uS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000551.22	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	OrthoFinder output from all 47 species
Cre12.g514500	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.41	OrthoFinder output from all 47 species
Dac_g01215	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Dac_g01981	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Dac_g26585	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Dcu_g05219	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Dcu_g09040	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g21739	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g48837	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g51508	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dde_g22249	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g08077	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g14354	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01012877001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.32	OrthoFinder output from all 47 species
GSVIVT01035927001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.44	OrthoFinder output from all 47 species
Gb_14912	EMB1080	component RPS11 of SSU proteome	0.21	OrthoFinder output from all 47 species
LOC_Os04g42380.1	EMB1080, LOC_Os04g42380	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
LOC_Os04g52361.1	EMB1080, LOC_Os04g52361	component RPS11 of SSU proteome	0.41	OrthoFinder output from all 47 species
LOC_Os08g10608.1	RPS11-BETA,...	component RPS11 of SSU proteome	0.27	OrthoFinder output from all 47 species
Len_g03065	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g04081	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Len_g54645	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31892	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_19350g0010	EMB1080	component RPS11 of SSU proteome	0.33	OrthoFinder output from all 47 species
Mp4g23360.1	EMB1080	component RPS11 of SSU proteome	0.22	OrthoFinder output from all 47 species
Mp6g10500.1	EMB1080	component RPS11 of SSU proteome	0.38	OrthoFinder output from all 47 species
Msp_g22593	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Msp_g27112	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g01705	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Nbi_g01738	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ore_g11217	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ore_g11218	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Pp3c1_27980V3.1	EMB1080, Pp3c1_27980	Nucleic acid-binding, OB-fold-like protein	0.25	OrthoFinder output from all 47 species
Pp3c2_13690V3.1	EMB1080, Pp3c2_13690	Nucleic acid-binding, OB-fold-like protein	0.16	OrthoFinder output from all 47 species
Pp3s116_30V3.1	EMB1080, Pp3s116_30	Nucleic acid-binding, OB-fold-like protein	0.21	OrthoFinder output from all 47 species
Ppi_g53479	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017004	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g04222	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g12786	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g12787	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo268639	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Solyc06g073790.3.1	Solyc06g073790	component RPS11 of SSU proteome	0.29	OrthoFinder output from all 47 species
Solyc06g073800.3.1	Solyc06g073800	component RPS11 of SSU proteome	0.2	OrthoFinder output from all 47 species
Solyc12g042080.2.1	Solyc12g042080	component RPS11 of SSU proteome	0.34	OrthoFinder output from all 47 species
Spa_g08091	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Spa_g22575	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Spa_g31268	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Tin_g03064	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g44672	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Zm00001e006955_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.3	OrthoFinder output from all 47 species
Zm00001e041635_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	4	72
IPR000266	Ribosomal_S17/S11	74	142

External Links

No external refs found!

AT3G48930 (EMB1080)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation