AT3G48440

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G48440
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
Aev_g10552	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Aob_g01939	No alias	regulatory protein of RNA homeostasis & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0013.g013277	ZFN1	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0503.g073924	ZFN1	regulatory protein of RNA homeostasis & original...	0.04	OrthoFinder output from all 47 species
Cba_g20210	ZFN1	regulatory protein of RNA homeostasis & original...	0.04	OrthoFinder output from all 47 species
Cre16.g689535	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.01	OrthoFinder output from all 47 species
LOC_Os01g68860.1	ZFN1, LOC_Os01g68860	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_557223g0010	ZFN3	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Ore_g07739	ZFN1	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Spa_g37336	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	163	183
IPR000571	Znf_CCCH	348	373
IPR000571	Znf_CCCH	395	418
IPR000571	Znf_CCCH	113	136
IPR000571	Znf_CCCH	206	230

External Links

No external refs found!

AT3G48440

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation