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  5. AT3G48060

AT3G48060


Description : BAH domain ;TFIIS helical bundle-like domain


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G48060

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00111920 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g046301 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g097046 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g46582 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Aev_g47750 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ala_g12503 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Ala_g20600 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Ala_g35523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17691 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Aop_g05279 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene13012.t1 Aspi01Gene13012 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024339 No alias not classified & original description: CDS=1-3606 0.03 OrthoFinder output from all 47 species
Azfi_s0100.g044240 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.07 OrthoFinder output from all 47 species
Azfi_s0124.g048462 No alias not classified & original description: CDS=36-3404 0.06 OrthoFinder output from all 47 species
Cba_g62788 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.02G029300.1 Ceric.02G029300 not classified & original description: pacid=50584188... 0.03 OrthoFinder output from all 47 species
Ceric.16G046100.1 Ceric.16G046100 not classified & original description: pacid=50589203... 0.03 OrthoFinder output from all 47 species
Ceric.24G078000.1 Ceric.24G078000 regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.1 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g14694 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g18043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007806001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01009936001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01024041001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01032521001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_02775 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_05084 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_05690 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os02g50840.2 LOC_Os02g50840 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g50850.2 LOC_Os02g50850 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os06g42490.1 LOC_Os06g42490 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g11454 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g11979 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
MA_10428034g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10432920g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_33300g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_39143g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp4g16230.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g04481 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.06 OrthoFinder output from all 47 species
Ore_g00447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16149 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g16150 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25799 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Ore_g31536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g06454 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Pir_g13634 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Pnu_g27613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005145 No alias not classified & original description: CDS=1-3426 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005665 No alias not classified & original description: CDS=481-3921 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017727 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018052 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.07 OrthoFinder output from all 47 species
Sam_g04915 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g29218 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.07 OrthoFinder output from all 47 species
Solyc03g114060.3.1 Solyc03g114060 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc06g071350.4.1 Solyc06g071350 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Solyc12g089320.3.1 Solyc12g089320 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Tin_g13967 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e002441_P003 Zm00001e002441 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e013353_P001 Zm00001e013353 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e037792_P001 Zm00001e037792 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e037793_P001 Zm00001e037793 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0010213 non-photoreactive DNA repair IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 360 409
IPR001025 BAH_dom 50 160
No external refs found!