AT3G47550

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G47550

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00126340	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.07	OrthoFinder output from all 47 species
Adi_g050586	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g074839	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g14258	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01768	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g06275	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g23685	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene49653.t1	Aspi01Gene49653	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s1957.g108376	No alias	E3 ubiquitin ligase & original description: CDS=1-984	0.02	OrthoFinder output from all 47 species
Cba_g05081	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G099300.1	Ceric.03G099300	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Ehy_g09856	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16213	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008001001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
GSVIVT01030910001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Gb_12336	No alias	RING-v-class E3 ligase	0.03	OrthoFinder output from all 47 species
LOC_Os01g49280.1	LOC_Os01g49280	RING-v-class E3 ligase	0.04	OrthoFinder output from all 47 species
LOC_Os08g33860.1	LOC_Os08g33860	RING-v-class E3 ligase	0.02	OrthoFinder output from all 47 species
LOC_Os11g38800.1	LOC_Os11g38800	RING-v-class E3 ligase	0.03	OrthoFinder output from all 47 species
Len_g56643	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g59358	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g11851	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g51830	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g010880.3.1	Solyc01g010880	RING-v-class E3 ligase	0.04	OrthoFinder output from all 47 species
Solyc06g069780.4.1	Solyc06g069780	RING-v-class E3 ligase	0.04	OrthoFinder output from all 47 species
Spa_g30245	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g00737	No alias	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e017493_P001	Zm00001e017493	RING-v-class E3 ligase	0.03	OrthoFinder output from all 47 species
Zm00001e021220_P001	Zm00001e021220	RING-v-class E3 ligase	0.02	OrthoFinder output from all 47 species
Zm00001e026895_P001	Zm00001e026895	RING-v-class E3 ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0007005	mitochondrion organization	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016559	peroxisome fission	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022143	DUF3675	121	218
IPR011016	Znf_RING-CH	69	114

External Links

No external refs found!

AT3G47550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation