AT3G47500 (CDF3)

Aliases : CDF3

Description : cycling DOF factor 3

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G47500
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00264070	CDF3,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.04	OrthoFinder output from all 47 species
Ala_g18800	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11020	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20563	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene13553.t1	CDF3, Aspi01Gene13553	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.34G056200.1	Ceric.34G056200	transcription factor *(DOF) & original description:...	0.04	OrthoFinder output from all 47 species
Lfl_g04123	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g11443	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g15852	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g45088	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g06748	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g22212	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18370	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g41707	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g067230.3.1	CDF2, Solyc02g067230	transcription factor (DOF)	0.08	OrthoFinder output from all 47 species
Solyc03g112930.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc05g007880.4.1	CDF1, Solyc05g007880	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Solyc06g069760.3.1	CDF3, Solyc06g069760	transcription factor (DOF)	0.08	OrthoFinder output from all 47 species
Zm00001e000526_P001	CDF3, Zm00001e000526	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	108	164

External Links

No external refs found!

AT3G47500 (CDF3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation