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AT3G47120


Description : RNA recognition motif (RRM)-containing protein


Gene families : OG0007393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007393_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G47120

Target Alias Description ECC score Gene Family Method Actions
Aop_g18121 No alias component *(Bud13) of non-snRNP MOS4-associated complex... 0.03 OrthoFinder output from all 47 species
Dcu_g02582 No alias component *(Bud13) of non-snRNP MOS4-associated complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01024759001 No alias Zinc finger CCCH domain-containing protein 25 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Pir_g16457 No alias component *(Bud13) of non-snRNP MOS4-associated complex... 0.03 OrthoFinder output from all 47 species
Spa_g06670 No alias component *(Bud13) of non-snRNP MOS4-associated complex... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0031981 nuclear lumen IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 183 205
IPR000504 RRM_dom 38 108
No external refs found!