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AT3G45540


Description : RING/U-box protein with C6HC-type zinc finger


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45540
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.11 OrthoFinder output from all 47 species
AT2G19610 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from all 47 species
AT2G21420 No alias IBR domain containing protein 0.07 OrthoFinder output from all 47 species
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.04 OrthoFinder output from all 47 species
AT2G25360 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G25370 No alias RING/U-box superfamily protein 0.1 OrthoFinder output from all 47 species
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.03 OrthoFinder output from all 47 species
AT3G45470 No alias IBR domain containing protein 0.11 OrthoFinder output from all 47 species
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.09 OrthoFinder output from all 47 species
AT3G45580 No alias RING/U-box protein with C6HC-type zinc finger 0.1 OrthoFinder output from all 47 species
AT3G53690 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G07640 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Dde_g00738 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g18985 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
MA_64485g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species
Solyc01g110080.2.1 Solyc01g110080 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
Solyc01g110090.1.1 Solyc01g110090 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0048446 petal morphogenesis RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 255 296
IPR002867 IBR_dom 169 235
IPR018957 Znf_C3HC4_RING-type 100 145
No external refs found!