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  5. AT3G45020

AT3G45020


Description : Ribosomal L18p/L5e family protein


Gene families : OG0001115 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001115_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45020
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Adi_g017855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34054 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32506 No alias component *(uL18m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Gb_15396 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ppi_g14607 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14806 No alias component *(uL18m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000719 photoreactive repair IEP HCCA
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP HCCA
MF GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004610 phosphoacetylglucosamine mutase activity IEP HCCA
MF GO:0004614 phosphoglucomutase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006041 glucosamine metabolic process IEP HCCA
BP GO:0006042 glucosamine biosynthetic process IEP HCCA
BP GO:0006047 UDP-N-acetylglucosamine metabolic process IEP HCCA
BP GO:0006048 UDP-N-acetylglucosamine biosynthetic process IEP HCCA
BP GO:0006290 pyrimidine dimer repair IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
MF GO:0015112 nitrate transmembrane transporter activity IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0019255 glucose 1-phosphate metabolic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043562 cellular response to nitrogen levels IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046349 amino sugar biosynthetic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070548 L-glutamine aminotransferase activity IEP HCCA
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 5 74
No external refs found!