AT3G42790 (AL3)

Aliases : AL3

Description : alfin-like 3

Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G42790

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00200570	AL5,...	RNA biosynthesis.transcriptional activation.Alfin-like...	0.03	OrthoFinder output from all 47 species
Adi_g079809	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Adi_g102186	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Aop_g49023	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0075.g037610	AL7	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Ceric.03G100800.1	AL4, Ceric.03G100800	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Dcu_g35547	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Len_g12567	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
MA_10431642g0010	AL5	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species
Pir_g03364	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Pir_g10688	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Pir_g13361	AL1	methylation reader Alfin of PRC1 complex & original...	0.04	OrthoFinder output from all 47 species
Sam_g18885	No alias	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Spa_g05741	AL6	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Tin_g01597	AL1	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Zm00001e009371_P002	AL2, Zm00001e009371	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e014851_P004	AL5, Zm00001e014851	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e027040_P001	AL6, Zm00001e027040	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e028587_P002	AL4, Zm00001e028587	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e031107_P001	AL2, Zm00001e031107	Alfin-like transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e031695_P001	AL6, Zm00001e031695	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0002213	defense response to insect	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0010375	stomatal complex patterning	IEP	HCCA
BP	GO:0010496	intercellular transport	IEP	HCCA
BP	GO:0010497	plasmodesmata-mediated intercellular transport	IEP	HCCA
CC	GO:0015630	microtubule cytoskeleton	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
CC	GO:0031371	ubiquitin conjugating enzyme complex	IEP	HCCA
CC	GO:0031372	UBC13-MMS2 complex	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021998	Alfin_N	12	139
IPR019787	Znf_PHD-finger	197	245

External Links

No external refs found!

AT3G42790 (AL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation