AT3G27850 (RPL12-C)

Aliases : RPL12-C

Description : ribosomal protein L12-C

Gene families : OG0004015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004015_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27850
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00109340	RPL12-A, RPL12,...	Protein biosynthesis.organelle translation...	0.15	OrthoFinder output from all 47 species
Adi_g010756	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Adi_g079765	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aev_g42507	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aev_g46439	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g28151	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g10576	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Als_g18386	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g26767	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aop_g05079	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Azfi_s0003.g007798	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cba_g11026	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.11G086700.1	RPL12-C, Ceric.11G086700	component *(bL12c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ceric.23G047100.1	RPL12-A, RPL12,...	component *(bL12c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Cre13.g581650	No alias	Protein biosynthesis.organelle translation...	0.15	OrthoFinder output from all 47 species
Dac_g04548	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Dcu_g15795	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Dde_g20806	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01032454001	RPL12-A, RPL12	Protein biosynthesis.organelle translation...	0.14	OrthoFinder output from all 47 species
Gb_05150	RPL12-C	component psRPL12 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
LOC_Os01g47330.1	RPL12-C, LOC_Os01g47330	component psRPL12 of large ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species
LOC_Os05g49320.1	RPL12-C, LOC_Os05g49320	component psRPL12 of large ribosomal subunit proteome	0.21	OrthoFinder output from all 47 species
Len_g10218	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Mp5g15720.1	RPL12-C	component psRPL12 of large ribosomal subunit proteome	0.24	OrthoFinder output from all 47 species
Msp_g09960	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Msp_g10664	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Nbi_g08072	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ore_g01687	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g06697	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Pir_g06429	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c26_10990V3.1	RPL12-A, RPL12,...	ribosomal protein L12-A	0.05	OrthoFinder output from all 47 species
Pp3c4_24130V3.1	RPL12-A, RPL12,...	ribosomal protein L12-C	0.12	OrthoFinder output from all 47 species
Pp3c5_2700V3.1	RPL12-C, Pp3c5_2700	ribosomal protein L12-C	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019415	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Sam_g51250	No alias	component *(bL12c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Solyc02g086730.3.1	RPL12-C, Solyc02g086730	component psRPL12 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Solyc02g086740.1.1	RPL12-C, Solyc02g086740	component psRPL12 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Spa_g08718	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Spa_g56005	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Tin_g00273	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e020247_P001	RPL12-C, Zm00001e020247	component psRPL12 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Zm00001e028001_P001	RPL12-C, Zm00001e028001	component psRPL12 of large ribosomal subunit proteome	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	ISS	Interproscan
CC	GO:0000315	organellar large ribosomal subunit	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0015934	large ribosomal subunit	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042742	defense response to bacterium	IEP	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000313	organellar ribosome	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
BP	GO:0002229	defense response to oomycetes	IEP	HCCA
BP	GO:0002239	response to oomycetes	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009547	plastid ribosome	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010726	positive regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0010728	regulation of hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0010729	positive regulation of hydrogen peroxide biosynthetic process	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032544	plastid translation	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1903426	regulation of reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1903428	positive regulation of reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:2000379	positive regulation of reactive oxygen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	61	111
IPR013823	Ribosomal_L7/L12_C	120	186

External Links

No external refs found!

AT3G27850 (RPL12-C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation