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  5. AT3G27400

AT3G27400


Description : Pectin lyase-like superfamily protein


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G27400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.08 OrthoFinder output from all 47 species
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.06 OrthoFinder output from all 47 species
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AT1G11920 No alias Pectin lyase-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT1G30350 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G13210 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G22080 RHS14 root hair specific 14 0.05 OrthoFinder output from all 47 species
Als_g10720 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g65574 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17935.t1 Aspi01Gene17935 EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0032.g024858 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1242 0.05 OrthoFinder output from all 47 species
Ceric.05G036500.1 Ceric.05G036500 EC_4.2 carbon-oxygen lyase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.14G053300.1 Ceric.14G053300 EC_4.2 carbon-oxygen lyase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.26G007400.1 Ceric.26G007400 EC_4.2 carbon-oxygen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.34G020500.1 Ceric.34G020500 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43009 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46894 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03656 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05863 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15970 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01014682001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.04 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_10353668g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_103716g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10437227g0030 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_474372g0010 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_62112g0010 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_6474333g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.03 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_956526g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Msp_g38292 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26214 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26215 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41164 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03086 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g14736 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g27978 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Sam_g16922 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g071570.3.1 Solyc03g071570 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g06272 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41522 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15440 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004654_P002 Zm00001e004654 pectate lyase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0009751 response to salicylic acid IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 146 329
No external refs found!